Shewanella yunxiaonensis: KDN34_06345
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Entry
KDN34_06345 CDS
T07775
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
syk
Shewanella yunxiaonensis
Pathway
syk03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
syk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
KDN34_06345 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
syk03400
]
KDN34_06345 (mfd)
Enzymes [BR:
syk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
KDN34_06345 (mfd)
DNA repair and recombination proteins [BR:
syk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
KDN34_06345 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
MFD_D3
CarD_TRCF_RID
ResIII
Glyco_tran_WecG
UB2H
ERCC3_RAD25_C
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
QUN07051
LinkDB
All DBs
Position
complement(1346069..1349533)
Genome browser
AA seq
1154 aa
AA seq
DB search
MTVFSVLAPQGATKAGDIRYLGLPEGVPRALTLASLAQQHGGITLLVTPDTPTALTLEAE
LRYLLADKVPVWLFPDRETLPYDSFSPHQDLISQRLETLSRLPSAKQALVIVPVTTLMVR
LPPKAFLSANVMLLKQGDHYPLQQMREHLVNAGYHLVGQVYEHGEFAIRGSILDIFPMGS
TAPLRIELFDDEVESIRYFDADTQLSQEPVDAIRMLPAREFPTDDAAIEGFRLRYRRYFE
VVVKEPESVYQQVSRHLMPAGIENYLPLFFDETASLFDYLSSDVQLITIGDLQTAADAHL
TQVQHRYEDRRVDPLRPLLAPKDLYLLTDQLFGSFKVLPRVQVDLPDSHKHQWHAAVNQL
PDLSVNHKQKQPLAALAEFTAQHDKILFSAESEGRREALLELLAKIDLKPLLFGGIREFL
QSDSSIGLIVSPLSVGCQLQDPRLSIICETELFGMRISQQRRRDKQRQISQDALIRDLAE
LKVGQPIVHLEHGVALYQGLETLDAGGMVAEYLKLEYAGGDKLYVPVSSLHLISRYTVGP
DQEPGLNKLGNDTWDKARKKAIERIRDVAAELLDIYARRQSRPGVAAKLDQQDYALFAQS
FPFEETVDQETAIDAVLLDMQSPVAMDRLVCGDVGFGKTEVAMRAAFVAVNAGKQVVVLV
PTTLLAQQHYENFKDRFADWPVRIEVMSRFRTAKEQQQVIDALADGKVDIVIGTHKLLNS
EVRFEDLGLLVIDEEHRFGVRQKEKIKALRANVDILTLTATPIPRTLNMAMSGMRDLSII
ATPPAKRLAVKTFVREYDKNTVREAIQREILRGGQVYFLHNNVETIEKAAEDIRELVPQA
QVVVAHGQMRERDLERVMSDFYHRRYNVLVCTTIIETGIDVPSANTIIIERADMFGLAQL
HQLRGRVGRSHHQAYAYLMTPHPKRMTTDARKRLEAIDALEDLGAGFMLATQDLEIRGAG
ELLGEEQSGHISKIGFSLYMDMLESAVNALKQGKEPSLAQMLNEQSELELRIPALLPEDY
VGDVNIRLSLYKRIANCRSETALDELKVELIDRFGLLPEATRNLMQMTLLKHQATGLGIK
KLEMHSRGGSLEFREDHRIDPGFIIGLLQSQPQIYRMDGPNKLKFTMATESSKQRLDLAT
LLLAQLAQHTLGDK
NT seq
3465 nt
NT seq
+upstream
nt +downstream
nt
atgaccgttttttctgttctggcaccgcagggtgccaccaaagcgggagatatccgctac
cttggcttgccagaaggtgtgccccgagcattaacgttagcctctttggcgcaacagcac
ggtggcatcacgctactggtgacaccagatacaccaacggcgctgacactcgaagctgaa
ctgcgctatttgcttgcggataaagtgccagtgtggctgtttccagaccgggaaaccctg
ccttacgacagtttttcaccacatcaggacctgatctcacagcgactggaaacgctatca
cgtctgcccagcgcaaaacaggcattagtgatcgtcccggtgaccacactgatggtgaga
ttaccgcctaaggcatttctcagcgccaatgtgatgttgctgaaacaaggcgaccactat
ccgctacaacagatgcgtgaacatttggtgaatgccggttaccacttagttggtcaagtc
tatgaacatggcgaattcgccatccgcggttctattctggatattttcccgatgggctcg
acagcgccgctgcgaatcgaactctttgatgatgaagtagagtctatccgctattttgat
gctgacacccagctatctcaggagccggttgacgcgatccgcatgttgccagctcgcgaa
tttccaaccgacgatgcagcgattgaaggttttcgtctgcgctaccggcgttactttgaa
gtggtagttaaagaacctgagtcagtttatcagcaagtcagccgtcacttgatgccagca
ggtattgaaaactacctgccattgtttttcgatgaaacagccagcctgttcgattatctg
agcagtgacgtgcagttaatcactattggtgatttacaaactgctgccgatgcccatttg
acccaagtacaacaccgctacgaagaccgccgcgttgatccattgcgaccactgctggca
cccaaggatctttatctgctgaccgatcaactgttcggcagttttaaagtcttgccgcgt
gttcaagtagacctgccggacagccataagcatcagtggcatgcagccgttaatcagctt
ccagatctgagcgttaatcataaacagaaacagccgctcgctgcgctggcagagtttacc
gcacaacatgacaaaatcttatttagtgccgaatctgaaggtcgccgcgaagcactgctg
gaattattagccaaaatcgatctcaagccgctgttgttcggcggtatccgtgagtttttg
cagagtgatagcagtatcggcctgattgtatcgccactgtcggtcggttgtcagttgcag
gatccccggttgagcatcatctgtgaaaccgaactgttcggtatgcgtatttcacagcag
cgacgccgcgataaacagcgacagatcagtcaggacgcgcttattcgcgatttggcggaa
ctgaaagtcggtcaaccaattgtgcatcttgaacatggtgtagccttgtatcaaggattg
gaaacccttgatgctggcggcatggtggctgaatatctcaagttggagtatgccggtggt
gacaaactctatgtgccggtgtcgtcactgcatcttatcagccgctatactgtcgggccg
gatcaggaaccgggactcaacaaactgggtaatgacacctgggacaaagcccgtaagaag
gcgattgagcggatccgagatgttgcggcagaactgctcgacatctatgcccgtcgccag
tcccgccccggcgtggcagccaaactggatcaacaggattacgcgctgtttgcccaaagt
tttccgtttgaagaaacagtagatcaggaaaccgccattgatgccgtgttgctggacatg
caatcgccggttgcgatggatcgtctggtgtgtggcgatgtgggttttggtaaaacggaa
gttgccatgcgcgcagcatttgtcgcagttaatgcaggtaaacaagtggtggtgttagta
ccaactacgctactggcgcaacagcactatgaaaactttaaggacagatttgccgactgg
ccggtgcgcatcgaagtgatgtcacgcttccgcacagcgaaagagcaacaacaggtgatt
gacgcacttgccgatggcaaggtcgatatcgtcatcggaacccataaactgctgaattct
gaagtacgctttgaagaccttggcttattggtcatcgatgaagaacatcgatttggcgta
cgtcagaaagagaagattaaggccttaagagcaaatgtggatattctgacgctcaccgca
acccctattccgcggacgctgaatatggcgatgtcagggatgcgtgacttgtcgattatc
gctaccccgccggccaaacgactggcggtaaaaacctttgtccgcgaatacgataaaaat
actgtacgcgaagcgattcaacgtgaaattctccgtggtgggcaggtgtattttctgcat
aacaatgtggagactatcgaaaaagccgccgaagatattcgggaactggtgccacaggct
caggtcgttgtggcccacgggcaaatgcgtgaacgcgatctggaacgcgtgatgtcggac
ttttatcaccgtcgttataacgtcttggtctgtaccactattattgaaaccggtatcgac
gttccaagtgccaacaccataattatcgaacgcgccgatatgtttggactggcgcaattg
caccagctccgcggtcgtgttggccgttcacatcatcaggcctacgcctacctgatgaca
ccgcatcccaaacgcatgacgaccgatgccagaaaacgccttgaagcgattgatgcactc
gaagatctgggcgcaggttttatgttagcaacacaagatctggaaattcgcggtgcaggt
gaactactcggtgaagaacagagtggccatatctcaaaaattggcttcagcctgtatatg
gacatgctggaatcagccgtgaatgcgctcaaacaaggtaaagaaccatcgctggcacaa
atgcttaatgaacagagcgaattggaactgcggatcccggcgctgttaccggaagattat
gtcggcgatgtgaatattcgcctgtcgctgtacaaacgcattgctaattgccgcagtgaa
accgcattagatgagctaaaagtagaactcatcgaccgctttggtttgttgccagaagcc
acccgcaatctcatgcaaatgacgctactgaaacaccaggccaccggtttgggaattaaa
aagctggagatgcacagtcgcggcggcagtctcgaatttcgtgaagatcatcggatcgat
cctggtttcattattgggcttctccaatctcaaccacaaatctatcgaatggatggtccg
aataagttaaagttcacgatggcaactgagagtagtaagcagcgattagatctggctacg
ttgctattagcacagttagcacaacacactctgggagataaatag
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