Synechococcus sp. KORDI-52: KR52_10050
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Entry
KR52_10050 CDS
T03346
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
synd
Synechococcus sp. KORDI-52
Pathway
synd03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
synd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
KR52_10050
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
synd03400
]
KR52_10050
Enzymes [BR:
synd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
KR52_10050
DNA repair and recombination proteins [BR:
synd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
KR52_10050
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
Helicase_C
TRCF
CarD_TRCF_RID
ResIII
UB2H
RecG_dom3_C
AAA_30
Motif
Other DBs
NCBI-ProteinID:
AII49482
UniProt:
A0A076HLF6
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All DBs
Position
1808430..1812008
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AA seq
1192 aa
AA seq
DB search
MPLRSLVTKLQGTALTGELDERSSRAERLLMRGAGRCSRALVASALSQRRGAPLLVVVPT
LEEAGRWTALLELMGWSQASLYPTSEGSPYEPFDPTSEITWGQLQVLSDLLGDPDSSSWA
IVATERCLQPHLPPPDVLKTKTRTLRKGDEVDLEKLGETLAQLGYERVTSIEQEGSWSRR
GDIVDIFPVSSELPVRLEFFGDELDKLREFDPASQRSLDPVEALRLTPTGFGPLMADQLR
ETMPEGLEQLLGSEGTEQLLNGGTPEGMRRLMGLAWEQPASLLDYLPDTTTVVIDERRQG
LAHGQQWLSHVEEHHHDMAAEAGLDESDRDRIWPAVLHREIESAYALTEIFHGFDMAELL
EVDQHPNSFDLASRPVAAYPNQFGKLGELIKGFQTERTAVWLLSAQPSRAVALLEEHDCI
SRFVPNAGDSNAISRLIEQNTPVALKVRGTAELEGLQLPAWRIALVTDREFFGQQSLSSS
GYVRRRRKAASRTVDPNKMRPGDFVVHRNHGIGRFKAMEKLAMSGDIRDYLVVQYADGIL
RVAADQLGSLGRYRATSETPPQLNRMGGTAWSKAKERAKKAVRKVALDLVKLYAERQQAA
GYAFPTDGPWQVEMEESFPYDPTPDQLKATADVKRDMERQEPMDRLVCGDVGFGKTEVAI
RAIFKAITAGKQVAMLAPTTVLAQQHWRTLSERFAPYPIKVALLNRFRTASERKSILDGL
KQGTIDAVVGTHQLLSKGASFQELGLLVVDEEQRFGVNQKEKIKVLRKDVDVLTLSATPI
PRTLYMSLSGVREMSLITTPPPLRRPIKTHLASLDPEAVRSAIRQELDRGGQVFYVVPRV
EGIEEVAAGLREMLPGLKLLVAHGQMAEGELENAMVAFNAGEADVMLCTTIVESGLDIPR
VNTILIEDAHRFGLAQLYQLRGRVGRSGIQAHAWLFYPGNASLSDTARQRLRAIQEFAQL
GSGYQLAMRDMEIRGVGNLLGVQQSGQMETIGFDLYMEMLQESLAEIQGQDIPSVEDTQV
DLPVTAFVPADWITDPDEKIAAYRAAADCLTAESLVELAAGWADRYGALPAAVVSLLQLM
ELKLLAKRCGFSRIKPEKPNIVLETPMEEPAFRLLRQGLPQHLHGRLVYQAGSGIQHKVM
ARGLGVLPMEKQLEQLMEWLRLMAAQIPDADGKTEAQRQEELRAKNAEVVKV
NT seq
3579 nt
NT seq
+upstream
nt +downstream
nt
atgccgctccgttccctggtgaccaagctgcagggcactgcactcaccggtgagcttgat
gagcgctcaagccgcgccgaacgcttgttgatgcgcggagccggtcgttgtagccgcgct
ttggtggccagtgcgttgtctcaacggcggggcgcacctctgctggttgtggtgccaacg
cttgaggaagcaggacgctggacggcgctgctggaattgatggggtggagtcaggccagc
ctgtatcccacaagcgaaggctctccctatgagccctttgaccccacgagcgaaatcacc
tgggggcaacttcaggttctgagtgacctgctgggggaccccgactcgtcgtcctgggcg
attgtggccaccgaacgttgcttgcagccacatctccctccgccggatgtcctgaaaacg
aaaacgcgcaccttgcgcaaaggggatgaggttgatctggagaaactgggcgagacgctg
gctcaacttggctacgagcgtgtcacctccattgagcaggaggggagctggagccgtcgc
ggggacattgtcgacatctttccggtgagcagtgagttgcctgttcgactcgaatttttc
ggagacgagctcgacaaactgcgggaattcgatcccgccagccaacgctccctggacccc
gtcgaggcccttcgactcacaccaacagggtttgggcctctgatggcggaccagctcagg
gagacgatgcccgagggacttgagcaactgctaggtagcgagggcactgagcagcttttg
aacggtgggacaccggaaggcatgcgccggctgatgggtctcgcctgggagcaacccgcc
tcactgctcgattacctgccggacaccacaacagtggtgatcgatgagcgacgccagggc
ttggcccacggacaacagtggctcagccatgtggaggaacatcaccacgacatggctgct
gaggcgggcctggacgagagcgatcgtgatcggatctggccagcggttctgcaccgtgag
attgaatccgcctatgccttgacggagatcttccatggctttgacatggcagaactgctg
gaagtcgaccagcaccccaacagcttcgacctcgccagccgacctgttgcggcctacccc
aaccaattcggaaagctcggagaactgatcaagggatttcaaaccgagcgcacggcggtt
tggttgctgtctgcgcaacccagccgagcggttgctctgctggaggagcacgattgcatc
agtcggtttgtgccgaacgcgggagacagcaatgccatttcccgtctgattgagcagaac
acccccgtcgccttgaaggtgaggggcacggccgaacttgagggtttgcagctgccggcc
tggcggattgccctggtcaccgaccgtgaattctttggccagcagagcctcagttccagt
ggctatgtgcgccgtcgtcgcaaggccgccagccgtacggtggatcccaacaagatgcgc
ccgggcgattttgtggtgcatcgaaaccatggcattggccgcttcaaagccatggaaaaa
ctcgcgatgtcaggcgacatccgcgactacctcgtggtgcagtacgccgatggaatcctt
cgtgttgccgccgatcaactcggcagcctggggcgttaccgcgccacgagtgaaacaccg
ccgcagctcaaccgcatgggtggcacggcctggagcaaggccaaggagagggccaagaag
gcggttcgcaaagttgctcttgatctggtgaagctgtatgcggagcggcaacaggctgct
ggctatgccttccccaccgacggcccctggcaggtggaaatggaggagtcattcccctat
gacccgacgccggatcaactgaaggccactgccgacgtgaaacgggacatggaacggcag
gagccgatggaccgtctggtgtgcggtgatgttggcttcggcaagaccgaagtggcgatc
cgcgccatcttcaaagccatcaccgctgggaagcaggtagcgatgctggctcctacaacc
gtgttggctcagcagcactggcgcacgctctcggaacgcttcgcgccgtatccgatcaag
gtggctctgctcaatcggttccgaacggcttcggaacgcaaatccattctcgatggcctg
aagcagggaaccatcgacgccgtggtgggaacccaccagttgctcagcaaaggagcgtca
tttcaagagctcggtctgttggtggtggatgaagaacagcgcttcggtgtgaaccagaag
gaaaagatcaaagtgctgcgaaaggacgtggacgtgctgaccctgtcggcaacaccgatt
cccagaacgctgtacatgagcctttcgggggtgcgggagatgagcctgatcaccacacca
ccgccgctgcgtcgtccgatcaagacgcacctggcttccctggatccggaggcggtgcgc
agcgccatccgccaggaactggatcgtgggggccaggtgttttatgtggttccccgggtg
gaaggaatcgaggaggtggccgcaggcctgcgggagatgctgccgggcctgaagctgttg
gtggctcacggtcagatggccgagggcgagctggagaacgccatggtggcgttcaacgcc
ggcgaagccgacgtgatgctctgcaccacaattgtggaaagcggcctagacatcccacgc
gtcaacacgatcctgattgaggacgcccaccgttttggcctggcccagctgtaccaattg
cggggacgcgtcggtcgcagtgggattcaggcccatgcctggttgttctatccgggcaac
gcatcgctgagcgacaccgctcgtcagcggctgcgcgccattcaggaatttgcccaactg
ggcagtggatatcagctcgccatgcgggatatggagatccgtggagtcggcaatctcctt
ggagtgcagcagagcggccagatggaaaccatcggctttgacctttatatggaaatgctg
caggaatccctggccgaaattcagggtcaggacatccccagcgttgaagacacccaagtg
gacctccccgtcacggccttcgtgcctgcggactggatcactgatcctgatgagaagatc
gcggcctaccgtgctgccgctgactgcctcaccgccgagtcactggtggagctggctgcc
ggttgggccgatcgctacggagcgctgcccgctgccgtcgtgtcgcttttgcagctgatg
gaactcaaacttctggcgaagcggtgcggcttctccaggatcaaaccggaaaagcccaac
atcgtgctcgaaactcccatggaggaaccggcgttccgtttgctgcgccaggggttgccc
cagcatctgcatggacgtttggtgtatcaggccggcagcggcatccagcacaaggtgatg
gcccgcggtctcggtgttctccccatggagaagcaactggagcagctgatggaatggctg
cgtctgatggcagcccagattcccgacgccgatggcaaaaccgaggcacagcggcaggaa
gagctgcgtgccaagaacgcagaggtggttaaggtctga
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