Synechococcus sp. PCC 6312: Syn6312_0405
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Entry
Syn6312_0405 CDS
T02370
Name
(GenBank) transcription-repair coupling factor Mfd
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
syne
Synechococcus sp. PCC 6312
Pathway
syne03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
syne00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Syn6312_0405
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
syne03400
]
Syn6312_0405
Enzymes [BR:
syne01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Syn6312_0405
DNA repair and recombination proteins [BR:
syne03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Syn6312_0405
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
Helicase_C
TRCF
CarD_TRCF_RID
ResIII
UB2H
Motif
Other DBs
NCBI-ProteinID:
AFY59636
UniProt:
K9RQ24
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All DBs
Position
complement(407753..411217)
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AA seq
1154 aa
AA seq
DB search
MTLAALIRSWAKLPLIAELTTKLQKHQSLHLTGIPRLVKGLVASTLAQSQPLLVVTATLE
EAGRWAAQLEMMGWGAVLFYPTSEASPYDPFDLEAEMAWGQLQVLAELGRENSNLAIVTT
ERALQPHLPPPDLFQDYCLRLEVGQESNLKTLSQTLANLGYERVSLVESEGQWSQRGDIL
DIFPVSAELPVRLEWFGEQLEKLREFDPANQRSLDAIPRLVLTPTSFSPLIAQALSEAEK
EQIQAILPPPEQEQWQAGNPPEGMRRFLGLAFERPASLIDYLAPNTLVVLDEPEQCRQHS
HRWYEQIESHWQEVNQRSLMPATHQTFADCLSQISDHQQLKLNELAEVNQGLNLSSRPVP
AIPHQFGKLAEAIRQEREKKFAVWLISAQPSRSVALLQEHDCPAQFVPNPKDFPAIDKLQ
AQRVPIALKYSGLAELEGFILPTLRTVVVTDREFFGQHSLANMGYVRKRRRAASKQVDVN
KLQPGDYVVHRQHGIGRFLKLEPLSISHETREYLVIQYADGVLRIAADQFNTLSRLRTGQ
DTPPQLNKLSGQAWEKTKQKVRKAIKKVAVDLLQLYAQRAQQQGFRYPPDQPWQVEMEDS
FPYQPTPDQLKATQDVKQDMESDRPMDRLVCGDVGFGKTEVAIRAIFKAITAGKQVAVLA
PTTILTQQHYHTLKERFAPYPIHVGLLNRFRTGEERKNILQRLVTGELDVVVGTHQLLGK
GVNFRDLGLLVIDEEQRFGVNQKEKIKSLKTQLDVLTLSATPIPRTLYMALSGVREMSVI
TTPPPSRRPIQTHLSPYDLEAIRSAIRQELDRGGQVFYVVPRVAGIEEVAGKLQMMVPGA
RILVAHGQMQEGELESTMLGFFNAEAEILVCTTIIESGLDIPRVNTILVEDAHKFGLAQL
YQLRGRVGRAGIQAHAWLFYPRQESLTEEARARLRAIQEFTQLGSGYQLAMRDMEIRGVG
NLLGAEQHGQMDAIGFDLYVEMLEEAIAEIRGQEIPTVEDTQIDLSVTAFIPADYIPDME
QKMSTYRAISASQDGLALKQVLLDLTDRYGVPPAPVLQLIRVVELKQMAKKLGFSRIRPE
SKQHVILETPMAEPAWNVLASNLPTHLQTRFVYSPGKVTVRGLGMQTADKQLESLIDWLG
KLQINVVKAGQQGK
NT seq
3465 nt
NT seq
+upstream
nt +downstream
nt
atgacactggctgctcttatccgtagttgggcaaaattacccctgattgcggaactcaca
accaagctccaaaagcaccaatccctgcatctgactggcattccgcgactggtcaagggc
ctggttgcttcgactttggcccaatcacagccgttactcgtcgttaccgccaccttagaa
gaagccggacgttgggccgcgcagttggaaatgatgggttggggggcagtgttgttttat
cccacctcggaagcttccccctatgatccctttgatttagaagccgagatggcctgggga
cagttacaggttttagcggaattgggtcgggaaaactcaaatttagccattgtcaccacc
gagcgcgccctccagccccatttaccgccaccggatttatttcaagactattgtttacgg
cttgaagtcggtcaggaaagtaatctcaaaaccctcagtcaaaccctggccaatttgggc
tatgagcgggtttctttggttgaatcggaagggcaatggagtcagcggggggatattctc
gatatttttccggtgtccgctgagttacctgtgcgcttggaatggtttggggagcaactg
gaaaaactacgggaatttgatccagccaatcaacgctccctagatgcaattccccgctta
gtgttaacgccgactagttttagtcctctgattgcccaggccctgagtgaagccgaaaaa
gagcaaattcaagccattcttcccccccccgaacaggaacaatggcaagcaggaaatcca
cccgaaggcatgcggcgatttttaggattagcgtttgaacggccggccagtttgattgat
tatctagctccgaatacattggtggttttagatgagccagagcagtgtcgtcaacatagt
catcgctggtatgaacaaattgaaagccattggcaagaggtgaatcaacggtcgttaatg
cccgccacccatcaaacctttgcagactgtttaagccaaattagtgaccatcaacaactc
aagctgaatgaactcgcggaagtaaatcaggggttaaatttatccagtcggccggtgcca
gccatcccccatcaatttggcaaactcgctgaagccatccgccaagaacgggagaaaaag
tttgcggtttggctcatttcggcccagcccagtcgctcggtggcattgctccaagaacac
gattgcccggcccagtttgtccccaatccgaaagattttccggccattgataaactccag
gcccagcgtgtccccattgccttgaaatattcggggttggctgaacttgaaggctttatt
ttaccgactctgcgcaccgttgttgttaccgaccgggaattttttgggcaacatagtctg
gccaatatgggctatgtccgtaaacgccgccgggccgcctcgaaacaggttgatgttaac
aagttacagccgggagattatgtcgttcatcggcagcacgggattgggcgatttctcaaa
ctcgaacccctgtcaatcagccatgaaacccgcgaatacttagttattcaatatgctgat
ggggtcttacggattgccgccgatcaatttaatacgctctcccgcttacgcactggacaa
gacaccccaccccagctcaataaactcagtggccaggcctgggaaaaaacgaagcaaaaa
gttagaaaagcgatcaaaaaagttgcggttgacctgctccaactctatgcccagcgggcc
caacaacaggggtttcgctatcccccggatcagccttggcaagtggaaatggaagattcg
ttcccctatcaaccgacaccggatcaactcaaagccactcaagatgtcaaacaggatatg
gaatcggatcggcccatggatcgcttggtttgtggggatgtcggttttggcaaaacagag
gtggcgattcgggcaattttcaaagcaattacagccgggaaacaagtcgcggttttggct
ccgacaacaatcctgactcaacagcattaccacaccctcaaagaacggtttgctccgtat
ccgattcatgtcggtttactcaatcggtttcgcactggagaagaacggaaaaacattctc
caacgactggtaacgggggaactcgatgtagtggtggggacgcatcaactattagggaaa
ggcgtaaattttcgggacttgggcctgctcgtgattgatgaagaacaacgatttggcgtg
aatcaaaaggaaaaaattaaatccctcaaaacccaactggatgtgttaaccctcagtgcg
acccccatcccacgcactctctacatggccttatccggtgttcgggaaatgagtgtaatt
accacgccgccaccatccagacgaccgattcaaactcatttatcgccctatgacttggaa
gcgatccgctcagccattagacaggagttagatcggggtgggcaggtgttttatgtggtg
ccgcgggtggccgggattgaggaggtggccgggaagttacagatgatggtgcctggcgcg
cggatattggtggcccacgggcaaatgcaggaaggggaactggaatcgacgatgttgggc
ttttttaatgctgaggccgaaattctcgtgtgtacgaccattattgaatccggtttagat
attccgcgggtgaatacaattttggtggaagatgcccataaatttggcctggcccaactc
tatcaactccggggacgggtggggcgggccggaattcaagcccatgcctggttattttat
ccccgtcaagaatccctcaccgaagaagcaagggccagattgcgggcaattcaggagttt
acccaactgggttctggctatcagttagcaatgcgggatatggaaattcgcggcgtcggg
aatctgttgggggcggaacaacacgggcaaatggatgcgattggctttgatttatacgtt
gagatgttggaagaagccattgccgaaattcggggtcaggaaattcccacggtggaagac
acccaaattgatctgagtgtcacggcctttatcccggctgactatattcccgacatggaa
caaaagatgagtacctatcgcgctatttctgcctcccaagatggcctggcgttgaaacag
gtattactcgatttaacggatcgctatggtgtgccgcctgccccggttttacagttaatt
cgcgtcgttgaactcaaacaaatggccaaaaaacttggattctcgcgcattagaccggaa
tctaaacaacacgtgattctcgaaaccccgatggcagaaccggcctggaatgtgttagcc
agtaatttacccactcatctccaaactcggtttgtctatagtccgggtaaagtcaccgtc
cggggcctggggatgcaaacggcggataaacagctagaaagtctaattgattggttaggt
aaactacagatcaatgtcgtcaaagctgggcaacagggtaagtga
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