Synechococcus sp. KORDI-100: KR100_09070
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Entry
KR100_09070 CDS
T03344
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
synk
Synechococcus sp. KORDI-100
Pathway
synk03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
synk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
KR100_09070
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
synk03400
]
KR100_09070
Enzymes [BR:
synk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
KR100_09070
DNA repair and recombination proteins [BR:
synk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
KR100_09070
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
DEAD
Helicase_C
TRCF
CarD_TRCF_RID
ResIII
UB2H
AAA_30
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
AII43510
UniProt:
A0A076H1C7
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All DBs
Position
1678099..1681677
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AA seq
1192 aa
AA seq
DB search
MPLRSLVRQLQDSALSGELLDRSRRTDRLLMRGAGRCSRALVASALARRDQRPLLIVVPT
LEEAGRWTALLDLMGWDSVSLYPTSEGSPYEPFDPTSEIIWGQLQVLSDLLGDPDGTNKA
MVATERCLQPHLPPPQALADQCRSLKRGDELDLEQLGEHLAHLGYERVSSIDQEGTWSRR
GDIVDIFPVSSELPVRLEFFGEELDKLREFDPASQRSLDAIEQLRLTPTGFSPLIADRLR
DEMPEGIERLLGDEATEALLEGGTPEGMRRLMGLAWNQPASLLDYLPERCCVLIDERRHG
LAHGQQWLDHAADHHQEMAAELGFSEDERDRLWPGVLHRDISEAYQTAEAFDGFDLAELL
EEDAHPNSFDLASRPVPAYPNQFGKLGELIKGYQKDKTAVWLVSAQPSRAVALLEEHDCI
SRFVPNSGDAPAIERLIQQNTPVALKTRGSAELEGVQLPPWRVALVTDREFFGQQTLTSS
GYVRRRRKAASRTVDPNKMRPGDFVVHRNHGIGRFKTMEKLAVSGDIRDYLVVQYADGTL
RVAADQLGSLGRYRATSETPPQLSRMGGSAWNKAKERAKKAVRKVAMDLVKLYAERHQAN
GYAFPVDGPWQIELEESFPFEPTPDQLKATADVKRDMEKPEPMDRLVCGDVGFGKTEVAI
RAIFKAITAGKQVAMLAPTTVLAQQHWRTLSERFAPYPIKVALLNRFRTASERKGILDGL
KAGTVDAVVGTHQLLGKGAAFNQLGLLVVDEEQRFGVNQKEKIKVLRKDVDVLTLSATPI
PRTLYMSLSGVREMSLITTPPPLRRPIKTHLAALDPEAVRSAIRQELDRGGQVFYVVPRV
EGIEDVAAGLRGMLPGLKLLVAHGQMAEGELESAMVAFNAGEADVMLCTTIVESGLDIPR
VNTILIEDAHRFGLAQLYQLRGRVGRSGIQAHAWLFYPGNASLSDNARQRLRAIQEFAQL
GSGYQLAMRDMEIRGVGNLLGVEQSGQMETIGFDLYMEMLQESLAEIQGQDIPSVEDTQV
DLQVTAFVPADWITDPDEKISAYRAAADCTSSEALVELAAGWADRYGALPGAVQSLLQLM
DLKLLAKRCGFSRIRPEKPNIALETPMEEPAFRMLRQGLPQHLHGRLIYQSGSGIQHKVL
ARGLGVLPMEKQLEQLMEWLKQMAAQIPDVNGRTASEMEAEQKRRNDQVLRV
NT seq
3579 nt
NT seq
+upstream
nt +downstream
nt
atgccgctgagatctctggtcagacagctgcaggactccgctctcagtggagaactgctg
gaccgttccagacggacggaccgcctgctgatgcgtggagccgggcgatgcagccgagcc
ctggttgccagtgctctagcccgaagagatcaacgccccctgctgatcgtcgtgccgaca
ttggaggaggcgggacgttggacggctctgctcgacctgatgggttgggacagtgtgagc
ttgtatccaacgagtgaaggttctccttacgaaccgttcgatcccaccagcgaaatcatc
tggggacaactgcaggtgctcagcgacctgcttggcgatcccgatggcaccaacaaagcg
atggtggccaccgaacgatgtctgcagccccatctgccaccgccacaagcgctcgcggat
caatgccgcagtttgaaacggggggacgaactcgacctcgagcaacttggcgagcatctg
gcccatctcggatacgaacgggtctcctccattgaccaggaagggacctggagccgacgg
ggggacatcgtcgacatcttcccggtgagcagcgaactgcccgtgcgtctggagttcttt
ggagaggaactcgacaaactgcgtgagttcgaccccgccagccagcgttccctggatgcc
atcgagcaattgcgcctgacgccgaccggcttcagcccgctcatcgcagaccgtctccgg
gatgagatgcccgaagggattgaacggcttctgggagacgaggcgactgaggccctgctg
gaaggaggcacccctgagggaatgcggcgcctaatgggactggcatggaatcagccagcc
tcgctactcgactacttgccggagcgatgctgcgtcctcatcgatgagcgacgccacgga
ctcgcccatggacagcagtggttggatcatgcggcggatcatcatcaggagatggccgct
gagctggggttcagcgaggacgaacgcgaccgcctctggcctggcgtgttgcatcgggac
atctccgaggcctatcagacagcggaagcctttgatgggtttgatctggcggaactgctc
gaggaggacgcccatcccaacagcttcgacctggccagccgaccggtgccggcctacccc
aatcagttcggcaaactcggcgaactgatcaagggctatcagaaggacaaaaccgccgtc
tggctggtgtcggcacagccgagccgagccgtggcgttgctcgaggaacacgattgcatc
agtcgtttcgttccgaacagcggtgatgcaccggcgatcgaacggctgattcaacagaac
acacctgttgccctcaagactcgcggcagtgccgagctggaaggcgtgcaattaccgccc
tggcgggttgcccttgtgaccgatcgggaattcttcggccagcagaccctgacctccagc
ggatatgtccgtcgccgacgcaaggcagccagtcgaacggtcgaccccaacaagatgcgt
cccggcgacttcgttgtgcatcgcaaccacggcatcggacgcttcaaaacgatggaaaaa
ctcgctgtctcgggcgacattcgcgattatctggtcgtccagtacgcggacggcacactc
cgggtcgctgctgatcagctgggaagcctcggtcgatacagggctacgagcgagacacct
ccccagctcagccgcatgggtggatcggcctggaacaaggccaaggaacgcgccaagaaa
gccgttcgcaaggtcgcgatggacctggtgaagctctacgcagagcgtcatcaggccaat
ggctacgcctttcccgtcgatgggccatggcagatcgagctcgaggagtcgtttccgttt
gaaccgactcccgatcaactcaaagccaccgccgatgtgaaacgcgacatggagaaaccg
gaaccgatggaccgtcttgtctgtggcgatgtcggtttcggaaaaacagaggtcgcaatc
cgcgccatcttcaaggcgatcacggccgggaagcaggtggccatgctggctccaacaacc
gttctggcgcagcagcactggcgcaccctgagcgaacgcttcgcgccttatccaatcaaa
gtggccctgttgaaccgttttcggacggcctcggaacgaaaaggcatccttgatggcctc
aaagccggcacggtggatgccgttgtgggaacgcaccagctgcttggcaaaggcgccgcg
ttcaaccagctgggactgcttgtggtggatgaggaacagcgcttcggtgtgaatcagaaa
gagaagatcaaggtgctgcgcaaggacgtcgacgtcctgacgctctcggcgactccgatt
cctcgaacgctgtacatgagtctttcaggcgtgcgggagatgagcctgatcaccacccca
ccgccattacgacgcccgatcaaaacccaccttgcggccctagacccggaagcggtccgc
agtgccattcgtcaggaactggatcgaggcggccaggtgttttacgtggtccctcgggtg
gaggggattgaggatgtcgctgcggggctgcgcgggatgcttcccggcctgaagctcctg
gtggctcacggccagatggcagaaggtgagctggagagcgccatggtggcgttcaacgcc
ggcgaggccgacgtgatgctctgcaccacgatcgtggagagcggtcttgatatcccccgg
gtgaacacgatcctgattgaggatgcccatcgattcggtctagcccagctttaccagttg
cgtggtcgtgtcggtcgcagcggaatccaggcccatgcctggctgttttatccaggcaat
gcatcgctgagcgacaacgctcgtcaacgactgcgtgcgatccaggaatttgcccagctg
ggcagcggttaccagttggcgatgcgggatatggagatccgtggtgtcggcaatctgctg
ggggtggagcagagcggccagatggaaacaatcggattcgacctctacatggaaatgctt
caggaatccctggccgagatccaggggcaggacataccgagtgtcgaagacacccaggtg
gacctccaggtcaccgccttcgtgccagcggactggatcaccgatcccgacgagaagatt
tcggcctatcgagcagcagccgactgcaccagctcagaagccctggtggaactggctgct
ggctgggctgatcgctatggcgctttgccaggagctgtgcagtccctcctgcagctcatg
gacctcaaactgctggccaagcgctgtggtttctcaagaattcgaccggaaaaaccaaac
atcgctctggaaacacccatggaggagccagcattccggatgctgcgacaagggcttccg
cagcatctccacggtcgtctgatctaccagtccggcagcggcatccagcacaaggtcctg
gcccgtggtcttggggtgctgccgatggagaagcagttggagcaattgatggaatggctg
aaacagatggcggctcagatccccgacgtcaatggacgaactgccagcgagatggaggcc
gaacagaaacgccggaacgaccaggtgttgagggtgtga
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