Synechococcus sp. NIES-970: NIES970_14870
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Entry
NIES970_14870 CDS
T09762
Symbol
mfd
Name
(GenBank) Transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
synn
Synechococcus sp. NIES-970
Pathway
synn03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
synn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
NIES970_14870 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
synn03400
]
NIES970_14870 (mfd)
Enzymes [BR:
synn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
NIES970_14870 (mfd)
DNA repair and recombination proteins [BR:
synn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
NIES970_14870 (mfd)
BRITE hierarchy
Motif
Pfam:
DEAD
UvrB_inter
Helicase_C
TRCF
CarD_TRCF_RID
ResIII
UB2H
TetR_C_31
Motif
Other DBs
NCBI-ProteinID:
BAW96554
UniProt:
A0A1Q2TXW1
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All DBs
Position
1526920..1530399
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AA seq
1159 aa
AA seq
DB search
MTFSSVVRFLSRSVLMAEFQQKLCTKGELHLSGIPRLPKGLIASGLAQLQEKNLLVVCAT
LEEAGRWAAQLEAMGWGQVLFYPTSEASPYEAFDPESEMIWGQMQTLGAIAQTTVTSKGM
AIVATERALQPHLPPQAVFQDFCLSLTPGQEIDSQAIADQLTRLGYERVSLVEVEGQWTR
RGDIVDVFPVSGELPVRLDFFGDELESIREFDPTSQRSLDKLEQLFLTPTTWGPLIGQNI
ADPQALSLTPEEIEQWTAGLYPEGMQRFLGVAFGEQVASILDYLPENTLVAVDELAQCLA
HGDRTYETHEGQWQLRHGECALPKIHRTAQDNFDRLGQRYPKFYLTELDEAGENSLNLSS
RPVPITPHQFGKLAEILRGKREIYSTITLDRYSTWLVSAQPSRSVALLQEHDCAAQFIPN
PRDYPAIEKHQIQGTAIALKYKGQAELEGFILPTFRLAVVTDREFYGQHALTSFGYIRKR
RRAASKAVDVNKLNPGDYIVHKSHGIGRFIKIETLQSREYLVLKYEDGTLRIPADSLDTL
SRYRHTAKGRPELHKMGGKTWEKTKEKVRKSVKKLAVDLLKIYAQRTEIKGIAYPTDTPW
QQEMEDSFPYQATPDQLKAVQDIKRDLEGDRPMDRLVCGDVGFGKTEVAIRAIFKVVTSG
HKQVALLAPTTILTQQHYHTLKERFAPYPINIGLLNRFRTASERKDILERLKNGELDIVI
GTQQILGQEVVFKDLGMLVVDEEQRFGVNQKEKIKAMKTKVDVLTLSATPIPRTLYMSLS
GIREMSLITTPPPSRRPIQTHVSRYNPEIVRTAIRNELDRGGQIFYVVPRVEGIEEIAAQ
LQAMIPTARVAIAHGQMDEAELETTMLTFNNGEADILLCTTIVESGLDIPRVNTIIVEDA
QRFGLSQLYQLRGRVGRSGIQAHAWLLYPSKGELTEKARKRLRALQEFSQLGSGYQLAMR
DMEIRGVGNLLGAEQSGQMEAIGFELYMEMLQECINEIRGEEIPQVDDCQIDLKLTAFIP
ANYIPDPDQKLAAYRLITRANSRPELVQIAADWGDRYGQLPPSVEQLLQVIELKAIAKSL
GFSRIKPEGKQNIALETPMEEPAWKRLEEKLPTHLHSRFVYTPKKVTVRGLGAIKPQQQL
DSLIEWLGWMQGVLEEAKV
NT seq
3480 nt
NT seq
+upstream
nt +downstream
nt
atgactttttcttcggttgttcgtttcctgagtcgttctgttttgatggcagagtttcaa
caaaaactctgtacgaaaggggaactccacctcagcggcatcccaagactccccaaagga
ttgatcgcctcaggtctggcgcaactgcaggaaaaaaatctcctggtggtttgcgccacc
ctagaggaagcgggacgatgggccgcccaactggaggcaatgggctgggggcaggtgctg
ttttatcccacctcggaagcatccccctatgaggcatttgacccggagtcggaaatgatc
tggggccaaatgcagaccctcggggcgatcgcccaaaccacagttacaagtaaggggatg
gcgatcgttgccacggaacgggcgcttcaaccccatctaccgccccaggcagtttttcag
gatttttgtttgtccctcaccccagggcaagaaattgacagtcaggcgatcgccgaccaa
ttaacccgtttgggttatgaacgggtgagcctggtggaagtagaaggccagtggaccagg
cggggggatattgtcgatgtgttcccggtgtctggggagttacctgtacgcctcgatttc
tttggggatgagctcgaaagcatccgggagtttgaccccactagccagcgttccctcgat
aagctggagcagttatttctcacacccactacttgggggccgctcattggtcaaaatatc
gctgatccccaagccctttccctaacgcccgaggaaatagaacaatggacagccggcctc
tatccagaaggaatgcagcgctttttgggggttgcctttggggagcaggtggcctcgatt
ttagattatctgcccgaaaatacccttgtggccgtggatgaactggcccaatgtttggcc
catggcgatcgcacctatgaaacccacgaaggccagtggcaattgcgccatggggaatgt
gccctaccaaaaattcaccgcaccgcccaggacaattttgatcgcctcggccaacgttac
cccaagttttacctaacggagctggatgaagccggggaaaacagcctcaacctttccagt
cgcccggtgccgattaccccccaccaatttggcaaactagctgaaattttgcgggggaag
cgggaaatttatagcaccatcacccttgatcgctatagcacttggctcgtgtctgcccag
ccgtcccgctccgtggccctgctccaggaacatgactgcgccgcccagtttatccctaat
cccagggactatcccgccatcgaaaagcaccagatccaggggacggcgatcgccctcaaa
tacaaaggccaggcagaactagaagggtttatcttgcccacgttccggttagctgtggtc
acggaccgggaattttatggccaacatgccctcaccagctttgggtacatccgcaaacgc
cgccgggctgcctcaaaagcggttgatgtaaataaactcaaccccggtgactacattgtg
cacaaaagccatggcattggtcgttttatcaaaatcgaaaccctccaaagccgggaatac
cttgtcctgaaatatgaagacgggacgctgcggattccggctgattcccttgataccctt
tcccgataccgccacacggcgaaaggacgccctgaactccacaaaatgggtgggaaaacc
tgggaaaaaacgaaggaaaaagtccgtaagtctgttaaaaagctggcggtggacctactt
aaaatctatgcccaacggacggaaattaagggcattgcctatcccactgataccccctgg
cagcaagagatggaggattctttcccctaccaggccaccccagaccaactgaaggcggta
caggacattaagcgagatctcgaaggtgatcgcccgatggatcggctggtttgtggcgat
gtgggcttcggaaaaacggaggtggcgatccgggccatttttaaggtggtcactagtggc
cataaacaagtggccctgcttgcgccaacgacgattcttacccaacagcattaccacacc
ctcaaggaacgctttgccccctacccgattaacattggcctcctcaaccggtttcgcacc
gcctctgaacgcaaggacattttagagcggctcaaaaatggcgaactagatattgttatt
gggacacagcagatcttgggtcaggaggtggtcttcaaagatctgggaatgctggtggtg
gacgaagaacagcgctttggagtgaaccaaaaggaaaaaatcaaggcgatgaaaaccaag
gtggatgtgctcaccctctccgccacgccgatcccgagaaccctttatatgtctttgtca
ggaattcgggagatgagcttaatcacgacgcctcccccctcccgtcgcccaatccaaacc
catgtgtcccgttataacccggaaatcgtccgcacggcgattcgcaatgaattagaccgg
ggcggccaaattttctacgtggtgcctcgggtggaagggattgaagagattgccgcccag
ttgcaggcgatgattcccacagcgcgggtggcgatcgcccacggtcagatggacgaggca
gaattggaaacgacgatgctcacctttaacaatggcgaggcggatattctcctctgcacc
acaatcgtggaatcgggccttgatatcccccgggtgaacacgattatcgtcgaagatgcc
caacgttttggcctgtcccagctctaccaactgcggggccgggtggggcgttcggggatc
caagcccacgcttggctcctctatcccagtaaaggggagctgaccgaaaaagcgcggaaa
cggctacgggcgctacaggaatttagtcaactcggttccggttaccaactggcaatgcga
gacatggaaatccggggtgtggggaatctgttgggggcagaacagtcggggcaaatggag
gcgatcggctttgagctgtatatggaaatgctccaggagtgcatcaatgaaattcgcggt
gaagaaattccccaggtggatgattgccaaattgacctcaaattgacggcctttatcccc
gccaactacatccccgaccctgaccagaagcttgctgcctaccgtttaattacccgggcc
aattccaggccggaactggtccaaattgcagccgattggggcgatcgctatggtcaactg
cccccctcagtggagcaactgctgcaggtgattgaactcaaagcgatcgccaaatccctt
ggtttttctcggattaaacccgaaggcaagcaaaatattgccctagaaacccccatggaa
gaacccgcctggaaacgcctagaagaaaagttgcccacccatcttcattcccgctttgtc
tacacgcccaaaaaagttacggtgcggggcctgggggcgattaaaccccagcaacaactg
gatagtttgattgaatggctcgggtggatgcagggggttttggaggaggcaaaggtttag
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integrated database retrieval system
