Synechococcus sp. PCC 7502: Syn7502_00978
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Entry
Syn7502_00978 CDS
T02371
Name
(GenBank) transcription-repair coupling factor Mfd
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
synp
Synechococcus sp. PCC 7502
Pathway
synp03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
synp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Syn7502_00978
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
synp03400
]
Syn7502_00978
Enzymes [BR:
synp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Syn7502_00978
DNA repair and recombination proteins [BR:
synp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Syn7502_00978
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
UvrB_inter
TRCF
CarD_TRCF_RID
ResIII
UB2H
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AFY73093
UniProt:
K9SS77
LinkDB
All DBs
Position
complement(981081..984467)
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AA seq
1128 aa
AA seq
DB search
MAFSSVIRTIGRSHLCNELETKLKINQVLTLTGVSRLAKGIIASALSSKSSLLVITATLE
EAGRWALQLEAMGWQQVHLYPASEALPQEQRLEPEVIWGQMQVLTDLAVKSKQIAIVATV
RALQPHLPKVKDFQEQSLALVTGMDISLSALGDRLTNLGYERTSLVETEGQWSRRGDIID
IFPVSSEMPVRIDYLGDQIERIREFDLTSQRGLDAIAGIMLTPTSFGNSACTESLLSYLA
EINSNFLIAIDELDQCQAHSQSWYAAAVLADSHPQINLEDDLEGNLENDLADGITETAIA
VNKLHRNWTECLAEIELFPRIYLSELAEENKGINLASRPIAAVPHQFGNLARTLREFRDQ
SYQITLVSAQPSRAVSLLQEHDCPAQFVPNPQDFLAIEKLQTARVPVAVKYSGLAEIQGF
ILPTFRILIVSDREFFGQHTLGSSGYVRKRRVAASKKVDLDKLSAGDYVVHRHHGIGQFL
RLESLTINKETREYLVIQYEDGLLRVVADQVGSLSRFRSSGDTKPTLNKMTGKAWANTTN
KVRKSIKKIAIDLLELYARRSQQVGYAFPPDMPWQQEMEDSFPYQPTPDQLKATQDVKQD
MESDRPMDRLVCGDVGFGKTEVAIRALFKALTAGKQSALLAPTTILAQQHYHTMQERFAP
YPINIALLNRFKSTMERKEIIQKLATGELDLVVGTHQLLSKEINFKNLGLLVIDEEQRFG
VAQKEKIKSFKTEVDVLTLSATPIPRTLYMSLSGVREMSLITTPPPSRRSIKTHLSRYDP
EAIRSAIRQELDRGGQVFYVVPRIEGIEETSTKLREMIPSARLAIAHGQMPEGELETTML
TFNSGEADILVCTTIIESGLDIPRVNTIIIEDAQKLGLAQLYQLRGRVGRSGVQAHAWLF
YQAKGELSEPARQRLRAIQEFTHLGSGYQLAMRDMEIRGVGSLLGAEQSGQMEAIGFDLY
MEMLQEAIAEIKGSEIPQVDDTQIDLPLTAFIPNNYIPDPDQKMAAYRALAAVNSRRELN
QILEEWRDRYGTVPAATQQLVKVMELKQVAKKIGFSRIKPEGKQNIILETKMEEPAWKTL
HQRLPKHLQSRFAFQSGKAIARGMAALSADKQLQTLIEYLELMQSEEP
NT seq
3387 nt
NT seq
+upstream
nt +downstream
nt
atggcattctcttcagttattcggacaatagggcgatcgcacctgtgtaatgaattagaa
actaaattaaaaatcaaccaagtattaaccctaactggagtatcgcgtttagccaaagga
attattgcctcagccttaagctctaaaagttccttactggtgattacggcaacccttgaa
gaagcgggacggtgggcattacaactagaggcaatgggctggcagcaggtgcatttatat
cctgcctcggaagccttaccccaagaacaacgccttgaacctgaagtaatttggggacag
atgcaggtgttaacggatttagcagttaagtctaagcaaattgccatagtagccacagtc
agagctttacagccccatttaccgaaggttaaagatttccaagaacagtcccttgcccta
gtcacaggtatggatatatctttatcagccttaggcgatcgcctgaccaatttaggctat
gaacgcactagtttggtggaaactgaaggacagtggagtcggcggggagatattattgat
atttttcctgtctccagcgaaatgcctgtacggatcgattaccttggggatcagattgaa
cggattcgggaatttgatttgacatcccaacggggcttagatgcgatcgcggggattatg
cttacccctaccagttttggaaatagtgcttgtacggagtcgttattgagctatctagcg
gaaattaattctaattttttaatagcgatcgatgaattagaccaatgtcaggctcatagt
caaagttggtatgctgctgcggtattagcagatagtcatccccaaataaatttagaggac
gatttagaaggtaatttagaaaatgatttggctgatggcattacggaaactgcgatcgca
gtaaataaactccatcgcaattggacagaatgtttagctgaaattgagctttttccgcga
atttatctatcggaattagcggaagagaataaaggcattaatttagccagtcgtcccatc
gccgccgttccccatcaatttggcaatttggcacgcaccctacgggaatttcgcgatcaa
agctatcaaattacgctagtttccgcccagccttctagggcagtgtctttattacaagag
catgattgtcctgctcaatttgtccccaatccccaagattttctggcaattgaaaaactg
caaactgctagagtgcctgttgcggttaagtattctgggttagcggaaattcaaggattt
atcttaccgacatttcggattttaattgttagcgatcgcgagttctttggacaacacacc
cttgggagttccggctatgtccgaaaacgccgagttgctgcttctaaaaaagtagattta
gataaactctcggcgggagattatgtggtacatcgtcatcatggcattgggcagttttta
aggttagaaagtctgactatcaataaagaaacccgagaatatttggtaattcagtatgaa
gatggcttactgcgggtagttgcggatcaagttggctctctatctagatttcgctctagc
ggtgataccaagcccacgttaaataaaatgacgggtaaagcatgggcaaataccactaac
aaagtgcgtaaatccattaaaaaaattgccattgacttattagaactctatgctcggcga
tcgcagcaagtgggttatgcctttcctcccgatatgccttggcaacaggaaatggaagat
tcttttccctatcaacctactcccgatcagcttaaagctacccaagatgtgaagcaggat
atggaaagcgatcgcccaatggatcgattggtctgcggagatgtgggatttggcaaaacc
gaagtggcaattcgggcattatttaaggctttaaccgcaggaaaacagtcagctctatta
gcaccgaccacaattctggcacagcagcattaccatactatgcaggaacggtttgctccc
tatcccattaatattgctctattaaatcgctttaaaagcactatggaacggaaagaaatc
attcaaaagcttgccacaggtgaattagatttagtcgtgggtacccatcagttattatcc
aaggagattaattttaagaatttgggcttactggtgattgatgaagaacaaagatttggc
gtggcacaaaaggaaaagattaaatccttcaaaaccgaagtcgatgtcctgacactatcg
gcaactccgattcctagaactctctatatgtcgctatctggggtcagggaaatgagctta
atcactacgcccccaccttctcggcgttcgattaaaacccatctatctcgctacgatcca
gaggctattcgttccgccattcgtcaagagttagatcgagggggacaggtattttatgtg
gtgccacgcattgaagggatcgaagaaaccagcaccaaactgcgagaaatgattcccagt
gccagattagcgatcgcccacggacaaatgcccgagggtgaactggaaacgacgatgctg
acctttaacagtggagaagcagatattctcgtctgtaccacgattattgaatctggcttg
gatattccccgtgtgaatacaattattattgaagatgctcagaaactgggattagctcaa
ctttatcaattacgcggacgggtagggcgatcaggcgttcaagcacatgcgtggctgttc
tatcaggcaaagggtgaactttccgagccagcaaggcaaaggttaagggcaattcaagaa
tttacccaccttggttctggctatcagttggcgatgcgggatatggaaattagaggcgta
ggtagtttacttggtgccgaacaatcggggcaaatggaagcgatcggttttgatctgtat
atggaaatgctgcaagaggcgatcgccgagattaaaggttcagaaattccccaagttgac
gatacccaaattgatttaccactgacagcgtttattcccaataattacattcctgatcca
gatcaaaaaatggcagcctatcgagccttagccgccgtgaattcccgccgtgaactcaac
caaattttagaagaatggcgcgatcgctatggaacagtaccagccgccacccaacaatta
gttaaagtgatggaactgaaacaagttgctaaaaaaatcggattctcccgcattaaaccc
gaagggaagcaaaatattatccttgagaccaaaatggaagaacccgcatggaaaactctc
catcaaagattacctaaacatctgcaatcaaggtttgcctttcaatctggtaaggcgatc
gctagagggatggcagcactctcagccgataagcaactccaaactttaattgaataccta
gagcttatgcagagcgaagagccttag
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