Synechococcus sp. WH 8103: SynWH8103_01320
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Entry
SynWH8103_01320 CDS
T04859
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
synw
Synechococcus sp. WH 8103
Pathway
synw03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
synw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
SynWH8103_01320 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
synw03400
]
SynWH8103_01320 (mfd)
Enzymes [BR:
synw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SynWH8103_01320 (mfd)
DNA repair and recombination proteins [BR:
synw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
SynWH8103_01320 (mfd)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
Helicase_C
TRCF
CarD_TRCF_RID
ResIII
UB2H
AAA_30
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
CRY92049
LinkDB
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Position
complement(1146824..1150402)
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AA seq
1192 aa
AA seq
DB search
MPLRSLVTQLRSAALTGELLQRTERDARLLLRGAGRISRALVASALAQKEGRPLLVVVPT
LEEAGRWTALLELMGWSSASLYPTSEGSPYEPFDPTSEIIWGQLQVLSDLIGTDDPAGKA
IVATERCLQPHLPPRQALEATCRTLKKGDELDLDELAETLARLGYERVSTIDQEGTWSRR
GDIVDIYPVSSELPVRLEFFGEELDKLREFDPATQRSLDPVDRLQLTPTGFGPLVADQLR
ESMPEGLDRLLGDEATEELLEGGTPEGLRRLMGLAWGQPACLLDYLPASAAVVIDERRHG
LAHGQQWLDHAIDHYSDMASELGLSEEERDLFWPAVLQRTIDEAYGLAEAFHGFDMAELL
EEDGHPNSFDLASRPMPAYPNQFGKLSDLIKGFQKEKTAVWLISAQPSRAVALLEEHDCI
GRFVSNPGDAPAIERLIEQNTPLALKSAGTAELEGLQLPAWRLALVTDREFFGQQTLGSS
GYVRRRRKAASRTVDPNKMRPGDFVVHRNHGIGRFKAMEKLAVSGDVRDYLVVQYGDGLL
RVAADQLGSLGRYRATSETPPQLSKMGGAAWTKAKERAKKAVRKVAMDLVKLYAERHQAN
GFAFPSDGPWQNELEESFPYEPTPDQLKATADVKRDMEKAEPMDRLVCGDVGFGKTEVAI
RAIFKAITAGKQVAMLAPTTVLAQQHWRTLSERFAPYPIKVALLNRFRTASERKTILEGL
KEGTIDAVVGTHQLLGKGASFQQLGLLVVDEEQRFGVNQKEKIKVLRKDVDVLTLSATPI
PRTLYMSLSGVREMSLITTPPPLRRPIKTHLAALDPEAVRSAIRQELDRGGQVFYVVPRV
EGIEDVAAGLREMLPGLKLLVAHGQMAEGELESAMVAFNAGEADVMLCTTIVESGLDIPR
VNTILIEDAHRFGLAQLYQLRGRVGRSGIQAHAWLFYPGNGSLSDNARQRLRAIQEFAQL
GSGYQLAMRDMEIRGVGNLLGVEQSGQMETIGFDLYMEMLQESLAEIQGQDIPSVDDTQV
DLPVTAFVPADWITDPDEKIAAYRAASDCRSGEALVELAAGWADRYGALPAAVQSLLQLM
ELKLLAKRCGVSRIKPEKPNIVLETPMEEPAFRLLRQGLPQHLHGRLVYQSGNALQHKVL
ARGLGVLPMDKQLEQLMEWLRLMAAQIPDADGTTEAQRLEAEGQRNEAVLRV
NT seq
3579 nt
NT seq
+upstream
nt +downstream
nt
atgcccctgcgttccctggtgacacagctgcgctcagcagccctcactggcgaactgctg
cagcgcaccgaacgtgatgcacggctgttgttgcggggggccggtcggatcagtcgtgct
ctcgtggcgagcgccctggcacaaaaagaaggaaggccattgctggtggtggtgccgacc
ctggaggaagccggtcgctggacagcgcttctggaattgatggggtggagcagcgcgagt
ctctacccaaccagcgagggatcgccctacgaaccgttcgatcccaccagtgaaatcatc
tggggacagcttcaggtgctgagtgacctgattggaaccgacgatccagcggggaaagcc
atcgtggccaccgaacgctgtcttcaaccccatctgccaccgcgacaggcactcgaggcc
acctgtcgcaccctgaaaaagggtgacgagctcgacctggacgagctagccgaaaccttg
gctcgcctcggttacgaacgggtgtccaccatcgaccaggaaggaacctggagccgacgc
ggcgacatcgttgacatctatccggtgagcagcgaactgccggtgaggctggaattcttc
ggagaagagctggacaagctgcgggaatttgatccagccacccagcgctcactggacccg
gtggaccgcctgcagctcacccccacgggctttggccctctcgtggccgatcaactgcgg
gagtcgatgccggaagggctggatcgcttgctgggggatgaagccacagaagaactgctg
gagggaggcacgccagaggggttgcgacgcctgatgggactggcatggggacaacccgcc
tgcctgctcgactatctgccggcctccgctgcggtcgtgattgatgagcgccgtcacgga
ctggcccacggtcagcagtggctggatcacgccatcgaccactacagcgacatggccagc
gaactgggtctatcggaggaggaacgtgatctgttctggccagctgttctgcagcgcacg
atcgacgaggcctatggcttggccgaggcattccatggctttgatatggcagagctgctg
gaggaggacggccatcccaacagctttgacctcgccagtcgcccgatgccggcctatccc
aatcagttcggcaaactcagcgatctgatcaagggattccagaaggagaaaaccgcggtc
tggctgatttctgctcaacccagccgagcggtggccttgctggaggaacacgactgcatc
ggccgcttcgtttccaatccaggcgatgcgccagcgattgaacggctgattgaacagaac
acgcccttggcgttgaaatccgccggcacggcggagctggaggggttgcaactcccggcc
tggcgcctggccctggtcaccgaccgtgagttcttcggccagcagaccctgggctccagt
ggctacgtgcgacgtcgccgcaaggcggccagccgcacggtggaccccaacaagatgcgt
ccaggcgacttcgtcgtccatcgcaaccacggcatcggacggttcaaagcgatggagaag
ttggccgtctcaggcgatgtgcgcgattacctcgtggtgcagtacggcgacggactgttg
cgcgttgcggcggatcaactgggcagtctcggccgctaccgggccaccagtgaaacgccg
ccacagctcagcaagatgggcggtgctgcctggaccaaggccaaggagcgagccaagaaa
gcggtccgcaaggtggcgatggaccttgtgaagctctacgcggagcggcatcaggccaat
ggcttcgccttccccagtgatggtccctggcagaacgagctggaggaatcgttcccttat
gaaccgacgccggatcagttgaaggccaccgccgatgtaaagcgcgacatggaaaaggcg
gagccaatggatcgtctggtctgcggagacgtcggtttcggcaaaacggaagtggccatc
cgcgccatcttcaaagcgatcacggcgggaaaacaggtggccatgctggcccccaccacc
gtgctggcgcagcagcactggcgcacgctgagtgaacgctttgcgccgtacccgatcaag
gtggcgctcttgaatcgctttcgcacagcatcggaacgcaagacgatcctggagggcctc
aaggaaggcaccatcgatgcggtggtcggcacccatcagctcttgggcaaaggggcctcg
ttccaacagcttggtctgctggtggtcgatgaagaacagcgcttcggcgtcaaccagaag
gaaaagatcaaggtgctccgcaaggacgtcgacgttctcaccctgtcggcgacaccgatt
cccagaacgctgtacatgagcctgtcaggcgtgcgggagatgagcttgatcaccacacca
ccgccactgcgtcgtccgatcaaaacccacctggcagccctggatcccgaagcggtgcgc
agtgccatccgccaggaactggatcgcgggggacaggtgttttacgtggtgcccagggtg
gagggcatcgaggacgtggccgccggactgcgggagatgctgcccggcctgaagctgctg
gtggcccacggccagatggcggagggtgaactggagagcgccatggtggccttcaacgca
ggagaagccgatgtgatgctctgcacgaccattgtcgagagcggactcgacattccacgg
gtgaacacgattctgatcgaggatgcccaccgcttcggattggcccagctctaccaactg
cggggtcgtgtggggcgcagtggcattcaggcccatgcctggctgttctatcccggcaat
ggttcgctgagtgacaatgcacggcaacgcttgcgagccatccaggagttcgcacaactg
ggcagtggctatcagctggccatgcgcgacatggagatccgtggagtcggcaacctgctc
ggcgtggagcagagcggccagatggaaaccatcggctttgacctttacatggaaatgctg
caggaatccctggcagagattcagggccaggacattccaagtgtcgacgacacccaggtt
gaccttcccgttactgcgtttgtgccggccgactggatcacggatcccgatgaaaaaatc
gctgcttatcgcgctgcgtccgactgtcgctccggcgaggccctggtggagttggcggcc
ggttgggcagatcgttacggagctctgccggcggcggtgcaatccctgctgcagttgatg
gagttgaaactgctggccaaacgatgcggtgtctcccgcatcaaaccggagaaacccaac
atcgtgctggaaacgccgatggaggaaccagcgttccggctgcttcggcagggcttaccc
caacacctgcatggtcggttggtgtaccagagcggcaatgcccttcaacacaaggtgctg
gctcgagggcttggggtgctgccgatggacaaacaactcgagcagttgatggagtggctg
cgattgatggcggcgcagattcccgatgccgacggaaccaccgaagcgcagcgtctggag
gcggaggggcagcggaacgaggcggtgctgcgggtgtga
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