Synechococcus sp. SynAce01: BM449_03395
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Entry
BM449_03395 CDS
T08413
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
syny
Synechococcus sp. SynAce01
Pathway
syny03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
syny00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BM449_03395
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
syny03400
]
BM449_03395
Enzymes [BR:
syny01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BM449_03395
DNA repair and recombination proteins [BR:
syny03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
BM449_03395
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
Helicase_C
TRCF
CarD_TRCF_RID
ResIII
UB2H
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
APD49272
UniProt:
A0A1J0PEU8
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All DBs
Position
670744..674286
Genome browser
AA seq
1180 aa
AA seq
DB search
MPLTALVRQLEQVPLTGEVLERSKRPDRLRLSGAGRPGRALISSALARLAAAPLLVVVPT
LEEAGRWSSLLELMGWPTTALYPTSEGSPYEPFDPTSEITWGQLQVLSELVDGAGARGWC
GAIVATERALQPHLPPPAALAAQCLSLRKGQLVDLDALADTLSRLGYERVPTIEQEGSWS
RRGDIVDVFPVSAELPVRLEFFGDTLEKLREFDLASQRSLDPIETVRLTPTGYGPLVADA
LRASMPDGLEGLLSPEALDQLLEGGTPEGMRRLMGLAWAQPASLLDYLPAHTLIAIDGRS
HCLAHGQQWFDHAEDHHAEVPVPRLHRPAAEALAEAGAFAGFDLAELHESDRHPNSFDLA
GRAVPAHPNQFGRLAALVKGYQQEKARVWLVSAQPSRAVALLEEHDCITRFVPNSNDIPA
IERLIDQNTPVALKIRGSAELDGLQLPAWKLVLLTDREFFGQQSLGTSGYVRRRRKAASR
TVDPGKMQPGDFVVHRNHGIGRFLKLENLAISGESRDYLVVQYADGTLRVAADQLGSLGR
YRASSDAPPDLNRMGGVAWSRAKERALKTVRKVALDLVKLYAERHQAPGFAFPADGPWQL
ELEDSFPYEPTPDQSKAISEVKRDMEKPQPMDRLVCGDVGFGKTEVAIRALFKAVTAGKQ
AALLAPTTVLAQQHWRTLSERFAPYPIKVALLNRFRTSSERKTILEGLKAGTVDVVVGTH
QLLGKGTSFEQLGLLVVDEEQRFGVQQKEKIKALRKDVDVLTLSATPIPRTLYMSLSGVR
EMSLITTPPPLRRPIKTHLAARDDEAVRSAIRQELDRGGQVFYVVPRVEGIEEVAEALRL
MLPGLKLLVAHGQMAEGELESAMVAFNAGEADVMLCTTIIESGLDIPRVNTILVEDAHKF
GLAQLYQLRGRVGRSGVQAHAWLFYPGDAALSEAARQRLRAIQEFAQLGSGYQLAMRDME
IRGVGNLLGVEQSGQMETIGFDLYMEMLQESLAEIQGQDIPAVEDTQIDLPITAFIPAEW
ITEADEKMAAYRAAAACGGKGELLELAADWIDRYGALPAPVNSLLQLMELKLIAKRCGFS
RIKPEKPNLVLETPMEEPAFRLLRQGLPQHLHGRLVYQGGAGSTAKVLARGLSVLPADKQ
LETLMEWLTAMASQIPQADGLTPAQQQDQSAAQNAAVLVV
NT seq
3543 nt
NT seq
+upstream
nt +downstream
nt
atgcccctcaccgccctggtgcgccagctcgagcaggtgcccctgaccggggaagtgctg
gagcgcagcaagcggccggatcgcctgcggctgagcggcgccggccggccgggccgggcc
ctgatcagcagcgccctggcccggctggctgcggcgccgttgctggtggtggtgccgacc
ctggaggaggcgggccgctggagctccctgctggagctgatgggctggccgaccaccgcc
ctttatcccaccagcgaaggctcgccctacgaaccgtttgaccccaccagcgagatcacc
tggggccagctccaggtgctcagtgagctggtggatggcgccggcgcccgcggctggtgc
ggcgcgatcgtggcgaccgagcgggcgctgcaaccccacctgccgccaccggcggccctg
gcggcccagtgcctcagcctgcgcaagggccagctggtcgacctcgacgccctggctgac
accctcagccggctgggttacgagcgggtgccaacgatcgagcaggaaggcagctggagc
cgccgcggcgacatcgttgatgtgtttccggtgagcgccgagctgccggtgcgcctggag
ttcttcggcgacacgctcgagaaactgcgcgagttcgacctggccagccagcgctcgctc
gatccgatcgagaccgtgcgtctcacccccaccgggtatggccccctggtggccgatgcc
ctgcgggcctcgatgcccgatgggctcgaaggcctgctcagccccgaagccctcgaccag
ttgctcgaaggcggcacccccgaggggatgcggcggctgatggggctggcctgggcgcaa
ccggcctcgctgctggattacctgcccgcccacaccctgatcgccattgatgggcgcagc
cactgcctggcccacggccagcaatggttcgaccacgccgaagaccatcacgctgaggtg
ccggtgccgcggctgcatcgtccggccgccgaggccctggccgaagccggggccttcgcc
ggtttcgatctcgccgaactgcacgagagcgaccgccatcccaacagctttgatctggcc
ggccgggccgtgcccgcccaccccaaccagttcggccggctggcggcgctggtgaagggc
taccagcaggagaaggcccgggtctggctggtgtcagcccagcccagccgcgccgtggcc
ctgctcgaagagcacgactgcatcacccgcttcgtgcccaactccaacgacatcccggcg
atcgagcgcctgatcgaccagaacacgccggtggccctgaagatcaggggcagcgccgag
cttgatgggctgcagctgccggcctggaagctggtgctgctcaccgaccgcgaatttttc
ggccagcagagcctggggacctcgggctacgtgcggcggcggcgcaaggcggccagccgc
accgtcgatcccggcaagatgcagcccggcgatttcgtggtgcaccgcaaccacggcatc
ggccgcttcttgaagctcgaaaatctggcgatcagcggcgaatcccgcgactacctggtg
gtgcaatacgccgacggcaccctgcgggtggcggccgaccagctcggcagcctcggccgc
taccgggccagcagcgacgccccacccgatctcaaccgcatgggcggggtggcctggagc
cgggccaaggaacgggccctcaagaccgtgcgcaaggtggcgctcgatctcgtcaagctc
tatgccgaacgccaccaggcccccgggttcgccttccccgccgatggcccctggcagctg
gagctggaggattccttcccctacgagcccaccccagaccagtccaaggcgatcagcgag
gtgaagcgcgacatggagaagccccagccgatggaccggctggtctgcggcgatgtgggc
ttcggcaaaaccgaagtggcgatccgggccctgttcaaggcggtgacagccggcaagcag
gccgccctgctcgctcccaccacggtgctggcccagcagcactggcgcaccttgagcgaa
cgcttcgccccgtacccaatcaaggtggccctgctgaaccgcttccgcaccagcagcgaa
cgcaagacgatcctcgaagggctcaaggccggcacggttgatgtggtggtgggcacccac
cagctgctgggcaagggcaccagcttcgagcaactcggcctgctggtggtggatgaagaa
cagcgtttcggtgtgcagcagaaagaaaaaatcaaggcgctgcgcaaagacgtggacgtg
ctcacgctctcggccacaccgatcccgcgcacgctctacatgagcctctccggggtgcgc
gaaatgagcctgatcaccacgccaccgccgctgcggcggccgatcaagacccacctcgct
gcccgtgacgacgaggcggtacgcagcgccatccgccaggaactcgaccgcggcggccag
gtgttctacgtggtaccgcgggtggaggggatcgaggaggtggctgaagcgctgcgcctg
atgctgccgggcctgaagctgctggtggcccacggccagatggcggaaggggagctggag
agcgccatggtggccttcaacgccggtgaagccgatgtgatgctctgcaccacgatcatc
gagagcggcctggatattccccgggtgaacacgatcctggtggaagatgcccacaagttt
ggcctggcgcagttgtatcaactgcgtgggcgggtgggccgcagcggcgtgcaagcccac
gcctggctcttctatcccggcgatgcggccttgagtgaggccgcccggcagcggctgcgg
gccatccaggaattcgcccaactgggcagtggctaccagctggcgatgcgcgacatggaa
atccgcggcgtcggcaatctgcttggggtggagcagagcggccagatggaaaccatcggc
ttcgatctctacatggagatgctgcaggaatccctcgccgaaatccagggccaggacatc
ccggccgtggaagacacccagatcgacctaccgatcaccgccttcatcccggccgagtgg
atcaccgaagccgacgagaagatggcggcctatcgcgccgccgccgcctgcggcggcaag
ggcgaactgctggagctcgccgccgactggatcgaccgctacggcgccctgccggcgccg
gtgaacagcctgctgcagctgatggagctgaaactgatcgccaagcgctgcggcttttcg
cgcatcaaacccgaaaaacccaatctggtgctcgaaaccccgatggaagaacccgccttc
cgcctgctgcgccagggtttgcctcaacacctgcatggccggctggtgtaccaaggcggc
gccggcagcacggccaaagtgctggcccgcggcctcagtgtgctgcccgccgacaagcag
ctcgaaaccctgatggagtggctcaccgccatggccagccagatcccccaggctgacgga
ctcaccccggcccaacaacaggaccaatcagcggcgcagaacgcggcagtgttggtggtg
tga
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