Synechocystis sp. IPPAS B-1465: C7I86_12715
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Entry
C7I86_12715 CDS
T05368
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
syo
Synechocystis sp. IPPAS B-1465
Pathway
syo03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
syo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
C7I86_12715 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
syo03400
]
C7I86_12715 (mfd)
Enzymes [BR:
syo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
C7I86_12715 (mfd)
DNA repair and recombination proteins [BR:
syo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
C7I86_12715 (mfd)
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Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
Helicase_C
TRCF
CarD_TRCF_RID
ResIII
UB2H
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AVP90455
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Position
complement(2702772..2706260)
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AA seq
1162 aa
AA seq
DB search
MTFSSILRHLQTLPLSKDLREKLQKRGHVQLSGLPRLPKGLIVSSLAQSLEKNLLVITAT
LEEAGRWTAQLELMGWQTVNFYPTSEASPYDPGRLESEMVWGQMQVLAELIQGHQVKGKA
IVATEKALQPHLPPVATLREYCLALRRGQEMDSKSLELTLARLGYERGSTVETEGQWSRR
GDIVDIFPVSAELPVRLEWFGDELEKIREFDPASQRSLDDLTGLVLTPTSFDQVIEPALN
AQAIDLSAWGEDAETEQLFGKEGLQRFLGLAFTEPACLLDYLPTETVCVLDEPEQCAAHS
ERWFEAVAQDWSALQLPNLPQLHRNFSALGDRLKTDFQYITLSEIHEANGDSLDISARPI
PTMPHQFAKLAEILRGKREIYSGLTLGQYSTWLISAQPSRTVSLLQEHDCAVQFIANPRD
YPAIEKSQIQRTAVTLKYSGLAELEGFILPTFRLVLVTDRELFGQHALATPEYVRKRRRA
TSKQVDINKLSPGDYVVHKSHGIGKFLKLDALANREYLMIQYADGILRVPADSLDSLSRF
RHTGTRPPELHKMGGKVWEATKNKVRKAVKKLAVDLLNLYAKRAKQVGYAYPPDSPWQQE
LEDSFPYQPTPDQLKAVQDVKRDLEGDRPMDRLVCGDVGFGKTEVAVRAIFKAVTSGNKQ
VALLAPTTVLTQQHYHTLKERFAPYPITIGLLNRFRTASEKKEILAKLKSGELDIVVGTQ
QVLGTSVKFKDLGLLVIDEEQRFGVNQKEKIKTLKTEVDVLTLTATPIPRTLYMSLSGIR
EMSLITTPPPSRRPIKTHLSPYNPEVIRTAIRNELDRGGQVFYVVPRIEGIEELGGQLRQ
MVPSARIAIGHGQMEESELESTMLAFNDGEADILVCTTIIEAGLDIPRVNTIIVEDAQKF
GLAQLYQLRGRVGRSGIQAHAWLLYPNQKQLTEKARLRLRALQEFSQLGSGYQLATRDME
IRGVGNLLGAEQSGQMEAIGYEFYMEMLQDAIKEIQGQEIPKVEDTQIDLPLTAFIPSDY
IPDLEEKMAAYRRITSIESTDELPKIALDWGDRYGMLPSPVEELFKVVKLKHLAKSLGFS
RIKVEGKQNLVLETPMEEPAWKLLAENLPNHLQSRFVYSAKKVVVRGLGVLAPAKQMDNL
IDWFGKMQGALPETKMETLVGK
NT seq
3489 nt
NT seq
+upstream
nt +downstream
nt
atgaccttttcctccatactccgccatctgcaaaccttaccgttgagcaaagacctgcgg
gaaaaattgcaaaagcggggccatgtgcaactcagtggcctaccccggttacccaaaggc
ctaatcgtttccagtttggcccagtccctggagaaaaatcttttggtcatcactgccacg
ttggaggaagcggggcgctggacagcccagttggaactgatgggttggcaaaccgttaat
ttttaccccacttctgaagcttccccctatgaccctgggcgactagagtcggaaatggtt
tggggacaaatgcaggtgttggcagaattaatccagggccatcaggttaagggcaaggcg
atcgtcgctacagaaaaggccctacagccccatttacccccggtggcaaccttacgggaa
tactgtttggccctacgacgcggtcaggagatggatagcaaaagtctggagcttacccta
gcgaggttgggctacgagcgtggcagtacggtggaaacagaggggcaatggagtcggcgg
ggggatattgttgatattttcccagtgtcggcggagctaccggtgcggctggaatggttt
ggtgatgagttggaaaaaatccgggagtttgatcctgctagccagcgttccttggatgac
ttaactggtttggtgctgacccccaccagttttgatcaggtgatcgaaccggcgttaaat
gcccaggccattgatctctctgcttggggagaagatgcggaaacggagcaattattcggc
aaagagggattacagcgatttttgggtctcgcctttactgaaccggcttgtttattagat
tatttaccgacagaaacagtctgtgtactggatgaaccagagcaatgtgcggcccacagt
gaacggtggtttgaggcggtggcccaggattggtcagctttgcagttaccgaatttaccc
caattacatcgaaatttttcggcccttggcgatcgcctaaaaacagattttcaatacatt
accctgtcagaaatccacgaagcgaatggggatagtttagatatttcagctcgacccatc
cccaccatgccccaccagtttgctaagttggcagaaattttacgggggaaacgggaaatt
tatagcggtttgacgttgggacaatacagcacttggttgatttcagcccagcccagtcgt
actgtttctttgttgcaggaacatgattgtgcggtgcaatttattgccaatccgagggat
tatcctgccattgaaaaaagtcagattcaacggacagcggtgacgttaaagtattcagga
ttagcggaattagaagggtttatcttaccgacctttcgtttagttttagtcacggatcga
gaattatttggtcagcatgctttagctacaccggaatatgtgcggaaacggcgacgggct
acgtctaaacaagttgacattaataaactttcccctggggattatgtagtccacaaaagt
catggcattggcaaatttttgaagttggatgcgttggctaatcgggaatatttaatgatc
caatatgccgacggcattttgcgggtgcccgccgatagtttggacagtttatcccgcttt
cgccatacgggaactagacctcccgaactgcataaaatgggcggtaaagtgtgggaagcc
accaaaaataaagtccgcaaagcagttaaaaaattggccgttgatttgctcaatctttat
gctaagcgggcaaaacaggtgggttatgcctatccgccggatagtccctggcaacaggaa
ttggaagattctttcccctaccaacccacccccgatcaactaaaagcagtacaggatgtg
aaaagggatttggaaggagatcgcccgatggatagattagtgtgtggggatgtgggcttt
ggcaaaacagaagtggcggtgcgggccatttttaaggccgtgaccagtggcaataaacag
gtggctttactagctcccaccacggtgttaacccaacagcattaccacacccttaaagaa
agatttgctccctatcccatcaccattggtttactgaatcgttttcgcactgcttcggag
aaaaaggagattttagccaagttaaaaagtggtgaattagatattgtggtaggtacccaa
caggtattaggtacatcggtaaaatttaaagatttaggacttttagttattgacgaagaa
cagcgctttggtgttaaccaaaaggaaaaaattaagaccctgaaaacggaagtagatgta
ttaaccctaacggcaactcccattccccgtaccctttatatgtccctttccggcattcgg
gaaatgagtctgattaccacaccgccaccttcccgtcgccccattaaaacccatttatct
ccctacaatcccgaagtaattcgcaccgccattcgtaacgagctagaccggggtgggcag
gttttttatgtcgtgcctcgcattgaaggtattgaggaattgggaggacaactgcgacaa
atggtgcccagtgctcgcattgccattggtcatggtcaaatggaggaatctgagttggaa
agtactatgttagctttcaatgatggtgaggcggacattttagtttgtactactatcatc
gaagctggtttggatattcccagggtaaacacaattattgttgaagatgcccaaaaattt
ggcttggcccaactttatcaactgcggggtcgggtagggcgatcgggtattcaagcccat
gcttggttgctctatcctaaccaaaaacagttaacggaaaaagctagattaagactgcgg
gcattgcaagaattcagccaacttggttccggttatcaactggccactagggatatggaa
attcggggcgtaggtaatcttttgggtgcagaacaatcggggcaaatggaggcgatcggt
tatgagttttatatggagatgttgcaagatgccattaaagaaatccagggtcaggaaatt
cccaaagtggaagatacccaaatagatttacctctcactgcctttattcccagcgactac
attcccgatttagaagaaaaaatggccgcctatcgtcgcattactagcattgaatccact
gatgagttgccgaaaattgccttggattggggcgatcggtatggtatgttaccaagtccg
gtggaggaattatttaaagtggttaagctcaagcatttagccaaatccttaggcttttct
cgcattaaagtggagggtaaacaaaatcttgtcttggaaacgcccatggaggaacccgct
tggaaattattagcggaaaatttacccaatcatctccagtcccgctttgtttacagtgcc
aaaaaagtggtggtgcggggtttaggagtgttggccccagctaagcaaatggataattta
attgactggtttggcaagatgcaaggggctttaccagaaacaaaaatggaaactttagtg
ggtaaatag
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