Picosynechococcus sp. PCC 7002: SYNPCC7002_A1287
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Entry
SYNPCC7002_A1287 CDS
T00664
Symbol
mfd
Name
(GenBank) Transcription-repair coupling factor (TRCF)
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
syp
Picosynechococcus sp. PCC 7002
Pathway
syp03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
syp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
SYNPCC7002_A1287 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
syp03400
]
SYNPCC7002_A1287 (mfd)
Enzymes [BR:
syp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SYNPCC7002_A1287 (mfd)
DNA repair and recombination proteins [BR:
syp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
SYNPCC7002_A1287 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
Helicase_C
TRCF
CarD_TRCF_RID
ResIII
AAA_22
UB2H
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
ACA99284
CyanoBase:
SYNPCC7002_A1287
UniProt:
B1XL29
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All DBs
Position
complement(1335650..1339138)
Genome browser
AA seq
1162 aa
AA seq
DB search
MTFSSVVRFLSRAALTAELNQKLQTQGELALSGLPRLPKGLLASSLAQLQEKNLLVVCAT
LEEAGRWAAQLEAMGWGQVLFYPTSEASPYEAFDPESEMIWGQMQTLGAIAQGQSSNVGK
GMVVVTTERALQPHLPPQTVFQDYCLTLTPGEELDHAGAIATQLTRLGYERVNIVETEGQ
WTRRGDIVDIFPVSGELPIRLDFFGDQLESIREFDPNSQRSLDKVDQLVLTPTAWAPLIG
QQILDPADLPLTPEEKEQWADGVYPEGMQRFLGIAFADQVASILEYLPENTLVAIDELSQ
CLAHGDRTYETSEAQWQLLNGDFPLPKIHRRVQENFDQVSQRYQKITLAELDDVSETSVN
LSSRPVPITPHQFGKLAEILRGKREIYSTITLDKYNAWLVSAQPSRSVSLLQEHDCAAQF
IPNPRDYPAIEKHQRQGTAIALKYKGQAELEGFILPTFRIAVVTDREFYGQHALTTFGYI
RKRRRAASKTVDVNKLNPGDYIVHKSHGIGRFIKIETLQSREYLVLKYADGILRIPADSL
DTLSRYRHTAKGRPELHRMGGKTWEKTKAKVRKSVKKLAVDLLKIYAQRAEMKGITYPSD
APWQQEMEDSFPYQATPDQLKAVQDIKRDLESDRPMDRLVCGDVGFGKTEVAIRAIFKVV
TGGHKQVALLAPTTILTQQHYHTLKERFSPYPINIGLLNRFRTASERKDILERLHKGELD
IVVGTQQLLGKDVQFKDLGLLVVDEEQRFGVNQKEKIKALKTKVDVLTLSATPIPRTLYM
SLSGIREMSLITTPPPSRRPIQTHVSRHNPEIIRTAIRNELDRGGQIFYVVPRVEGIETI
ATQLQEMIPSARVAIAHGQMNEADLETTMLTFNNGEADILLCTTIVESGLDIPRVNTIIV
EDAQKFGLSQLYQLRGRVGRSGIQAHAWLLYPSKGELTEKARKRLRALQEFSQLGSGYQL
AMRDMEIRGVGNLLGAEQSGQMEAIGFDLYMEMLQDCISEIRGQEIPQVDDCQVDLRLTA
FIPSNYITDGDQKLDAYRLITQANSKLELMQIAADWGDRYGKLPPSVEQLLQVIELKMIA
KSLGFARIKPEGKQNIVLETPMEEPAWQRFAEKLPSHLQSRFVYTSKKVTVRGLGAMKPQ
QQLDSLIEWLGRMQGVLEEARV
NT seq
3489 nt
NT seq
+upstream
nt +downstream
nt
atgactttttcttcggttgtccgttttttgagccgcgctgccctcaccgcagaattaaac
caaaagctccagacccaaggggaactcgcattaagtggcctgccaagactccccaaaggg
ctgctggcctcaagtttggcgcagttgcaggagaaaaatttattagtagtttgtgccacc
ctagaggaagccggacgttgggcggcccaattagaggccatgggttgggggcaggtcttg
ttttatcccacctcggaagcgtccccctacgaggcctttgatccagagtcagaaatgatc
tgggggcagatgcaaaccctaggggcgatcgcccagggtcagtcgtctaatgttggtaag
ggcatggtcgtggtgacaacggagcgcgctctccagccccatctgccaccccaaacggtt
ttccaagattattgtttgaccttaacgccgggagaagaactcgatcacgccggggcgatc
gccacccagttaacgcgcctgggttatgagcgggtaaatattgtcgaaaccgaaggccaa
tggactcgtcggggagatattgttgatatttttccggtgtcgggggagttaccgatccgc
ttagattttttcggtgatcagctcgaaagcatccgggagtttgaccccaacagccagcgt
tccctcgataaagtagaccaactggttttgacccccacggcctgggctcctttaattggt
caacagatccttgatccggcggatctccccttaaccccagaggaaaaagaacaatgggcg
gatggtgtttacccggagggaatgcaacgctttttggggatcgcctttgcggatcaggtg
gcctcgattttggaatatttacccgaaaataccttggtggccatcgatgaactctcccaa
tgtctggcccatggcgatcgcacctacgaaaccagcgaggcccagtggcagttactcaat
ggcgactttcccttgccgaaaatccaccgcagggtgcaagaaaatttcgaccaagtcagc
caacggtatcaaaaaatcactctggcagaacttgatgatgtcagtgaaaccagtgtcaac
ttgtccagccgtccggtgcccattacaccgcaccagtttggtaaattagcagaaattttg
cggggtaaacgggaaatctacagcaccattaccctcgataaatacaatgcttggctggtc
tcggcccaaccctcacgctctgtgtccttactccaggaacatgactgcgccgcccagttc
atccccaaccccagggattatcccgccatcgaaaagcaccaacgccaaggcacggcgatc
gcccttaagtacaaaggccaggcagaactcgaaggttttattctacccacctttagaatt
gccgttgttaccgaccgagaattctatggccaacacgccctcaccacctttggttacatc
agaaaacgtcgccgggccgcctcaaaaaccgttgacgttaataagctcaatcccggtgat
tatattgtccacaaaagccacggtattggtcgttttatcaaaattgaaaccctgcaaagt
cgagaatatttagttctcaaatatgccgatggaattttgagaattcccgcagattcttta
gataccctgtcccgctatcgccacactgccaaggggcgtccggaactccaccgcatgggc
ggtaaaacctgggaaaaaaccaaggccaaggtcagaaagtccgttaaaaagctggccgtt
gacctcttaaaaatctatgcccaacgggcagaaatgaagggaataacctacccaagcgat
gccccctggcaacaggaaatggaggattctttcccgtaccaagcaaccccagaccaactg
aaggccgtccaggatattaagcgggatctcgaaagcgatcgcccaatggatcggctcgtt
tgtggcgatgtgggatttgggaaaacagaggtggcgatccgggccatttttaaagtggtg
actggcggccataaacaggtggctctcttggcaccgaccacaattttgacccaacagcat
taccacactttaaaagaacgcttttctccctacccgatcaatattggccttttaaaccgc
ttccgcaccgcctccgaacgcaaggacattttggagcggctccacaagggcgaattagac
attgtagtcggcacccaacaactcctcggcaaagacgtgcaatttaaggatttaggtttg
cttgtggtcgatgaagaacaacgctttggggtgaatcaaaaggaaaaaattaaggctctc
aaaacgaaggttgatgttttgacgttgtccgccaccccgattccgcgcactctatacatg
tccctgtccggcattcgggaaatgagcctgatcaccacgccaccgccctcccgtcgcccg
atccaaacccatgtgtcccgccataaccctgaaattattcgcactgcgattcgcaatgaa
ttagatcggggcggacaaattttctatgtggtgccccgtgtcgaaggaatcgaaaccatt
gccacccaattacaagaaatgattccctcggcgcgggtggcgatcgcccacggtcagatg
aacgaagccgacctcgaaacgacgatgttgacctttaataatggcgaggcggatattctt
ctctgtacgaccattgtggagtctggcttagatattcccagggtgaacacgattatcgtc
gaagatgcccaaaaatttggcctctcccagctctatcaactgcggggtcgggtgggacgc
tccgggatccaggcccacgcgtggctcctttatccgagcaaaggggaactgaccgaaaaa
gcccggaaacgattgcgcgccttgcaggaatttagtcaactgggttctggttatcaattg
gcgatgcgggatatggaaattcgcggcgtgggaaatctccttggggcagagcagtccggg
caaatggaggccattggctttgatctgtacatggagatgctccaggattgcatcagtgaa
attcgcggccaggaaattccccaggtggatgactgtcaggtggatctaagactcacggcc
tttattccgagcaactacatcaccgatggcgaccaaaagctcgatgcctatcgtctgatt
acccaggccaactctaaactggaactgatgcaaattgctgccgattggggcgatcgctac
ggcaaattacccccctcggtcgagcaactgctccaggtcattgagctaaaaatgattgcc
aaatcccttggttttgcgcgcatcaaacccgaaggcaaacaaaatatcgtcctagaaacg
cccatggaggaacccgcctggcagcgcttcgccgaaaagttgccgtcccatctccagtcc
cgctttgtgtacacctctaaaaaagtgacggtgcggggtttgggggcgatgaaacctcag
caacagttggatagtcttatcgagtggctcggcagaatgcagggggtgttagaggaagcc
agggtataa
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