Synechococcus sp. RCC307: SynRCC307_0070
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Entry
SynRCC307_0070 CDS
T00523
Name
(GenBank) Predicted hydrolase of the metallo-beta-lactamase superfamily
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
syr
Synechococcus sp. RCC307
Pathway
syr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
syr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SynRCC307_0070
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
syr03019
]
SynRCC307_0070
Messenger RNA biogenesis [BR:
syr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
SynRCC307_0070
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Lactamase_B
RMMBL
RNase_J_C
Lactamase_B_2
UL11
Motif
Other DBs
NCBI-ProteinID:
CAK26973
CyanoBase:
SynRCC307_0070
UniProt:
A5GQ14
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Position
66035..67894
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AA seq
619 aa
AA seq
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MSSNGSKTQQPTLRVIPLGGLHEIGKNTCVFEFGDDLVLIDAGLAFPSDGMHGVNVVMPD
TSFLRENQKRIRGMIVTHGHEDHIGGISHHLKHFNIPIIYGPRLALSLLEGKMSEAGVAD
RTVLQTVTPREVVKLGQHFKIEFIRNTHSMADSYSLAVTTPVGTVIFTGDFKFDHTPVDG
EHFDMARLAHHGDQGVLCLFSDSTNSEVPGFCPPERSVFPCLDRRIAEAEGRVIITTFAS
SIHRVAMVLELAMKNGRKVSLLGRSMLNVIAKARELGYMRCPDDLFVPIKQIRDLPDRET
LLLMTGSQGEPLAALSRISRGEHPQVQVKSTDTIIFSASPIPGNTISVVNTIDRLMMLGA
KVVYGKGEGIHVSGHGFQEDQKLMLALTKPKFMVPVHGEHRMLVQHARTAHSMGVPENNT
LIIDNGDVVELTADSIRKGDPVKAGIELLDNSRTGIVDARVLKERQQLAEDGVITLLAAV
SVDGKMVAPPRVNLRGVVTTAEPRKLSMWAEREVNWVLDNRWKQLCRNTGGKAPEVDWIG
VQREIEVGLQRRLRRELQIEPLIICLVQPAPAGTPPYKSKAMEEKDDRPAPRHQRNNDRG
GDRNNDNRQRRRRSTAVAG
NT seq
1860 nt
NT seq
+upstream
nt +downstream
nt
atgagctccaacggttccaagacccaacagcccaccttgcgggtgatccccctgggcggc
ttgcacgagatcggaaagaacacctgtgtttttgaattcggtgacgacctggttctgatt
gatgcaggtctggcgttccccagcgacggcatgcacggggtgaacgtggtgatgccagac
acgagcttcctgcgcgagaaccaaaagcgcattcgcggcatgatcgttacccacggtcat
gaagaccacatcggtggcatctcccaccacctcaagcacttcaacattccgatcatttac
ggcccgcgtttggccctgtccctgctcgagggaaagatgtcggaagccggcgtcgctgac
cgcacggtgctgcagacggtgaccccgcgtgaagtggtcaagctcggccagcacttcaag
attgagttcattcgcaacacccactcgatggccgacagctattcgctggcggtgaccact
cctgtgggcacggtgatcttcaccggtgacttcaagttcgaccacaccccggtcgatggt
gagcactttgatatggctcgcctagcccaccacggtgatcagggtgtgctttgcctgttc
agtgattccaccaactcggaagtgccgggcttctgcccgcccgagcgctcggtgttcccc
tgcctggatcgccgcatcgccgaagccgaaggtcgcgtgatcatcaccaccttcgccagc
tcgattcaccgggtggccatggtgctggaactggcgatgaagaacggccgcaaggtgagc
ttgttgggtcgctcgatgctgaatgtgatcgccaaagcacgggagctcggctacatgcgc
tgccccgatgatctgttcgtgccgatcaagcagatccgtgacctgccggatcgcgaaacc
ctgctgctgatgaccggtagccaaggggagccgctggctgctttgagccggatttcacgc
ggtgagcatccccaagttcaggtcaagagcaccgacacgatcatcttctcggccagcccc
atccccggaaacaccatctcggtggtcaacaccattgaccgcctgatgatgctgggcgcc
aaggttgtgtatggcaaaggcgagggcatccacgtgtccggtcacggcttccaggaagac
cagaagctgatgctggcgctgaccaagcccaagttcatggtgcccgtgcacggcgagcac
cggatgttggtgcaacacgcccgcacggcccattccatgggtgtgccagaaaacaacacc
ctgatcatcgataacggtgatgtggtggagctcaccgccgattcgatccgcaagggtgat
ccggtgaaagcgggcatcgagctgctcgataactcccgcaccggcatcgtggatgcgcgg
gtgctcaaagagcgtcagcagctcgccgaagacggtgttatcaccctgctggctgctgtc
agcgttgacggaaagatggtggccccgccccgggtcaatctgcgtggagtggtcaccacc
gctgagccccgcaagctctcgatgtgggctgagcgcgaggtgaattgggtgctggacaac
cgctggaagcagctgtgccgcaacaccggtggcaaggctcctgaggtggattggattggt
gtgcagcgggagattgaagtggggctgcagcgccgcttgcgccgtgagcttcagattgag
ccgctgatcatttgcctggtgcagcccgctccggccggcacgccgccatacaagtccaag
gcgatggaggaaaaggacgaccgtccggcaccgcgccaccagcgcaacaacgaccgcggt
ggcgatcgcaacaacgacaaccgccagcgccgccgccgttccaccgctgtggcgggttag
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