Synechococcus sp. RCC307: SynRCC307_1465
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Entry
SynRCC307_1465 CDS
T00523
Symbol
mfd
Name
(GenBank) Transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
syr
Synechococcus sp. RCC307
Pathway
syr03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
syr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
SynRCC307_1465 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
syr03400
]
SynRCC307_1465 (mfd)
Enzymes [BR:
syr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SynRCC307_1465 (mfd)
DNA repair and recombination proteins [BR:
syr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
SynRCC307_1465 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
Helicase_C
TRCF
CarD_TRCF_RID
ResIII
UB2H
AAA_16
Motif
Other DBs
NCBI-ProteinID:
CAK28368
CyanoBase:
SynRCC307_1465
UniProt:
A5GU09
LinkDB
All DBs
Position
complement(1301685..1305236)
Genome browser
AA seq
1183 aa
AA seq
DB search
MPLTALVRQLQQVPLTGEVLERSRRPDRLRLQGASRGARALLASAMARCEGAPLLVVVPT
LEEAGRWAALLELMGWPTTQLYPTSEGSPYEAFDPTSEITWGQLQVLSELVDEQGDGWQG
VIVATERALQPHLPPPAVLADQCLTLRKGASIDLEELAANLARLGYERVSTIEQEGSWSR
RGDIVDLFPVSAELPVRLEFFGEDLEKLREFDPATQRSLDAVDLVRITPTGYGPLVADAL
RANLPDQLDQLLNAEAMEQLLAGDTPEGMRRLMGLAWQQPSSLLDYLPEHTLLVLDERRQ
AMAHGQQWFDHAEQHHGDEVDGLLPPTLHRPISDTIEALEAFAGFDLAELAETDQHPNSF
DLNSRAVPAYPNQFGKLAGLIKDFQREKTRVWLLSAQPSRAVALLEEHDCITRFVPNPGD
QPAIERLIEQNTPVALKTKGTAELEGLQLPAWRLALITDREFFGQQNLTASGYVRRRRRA
ASRTVDPNRMRQGDFVVHRNHGIGRFLKMEKLAISGDARDYLVVQYLDGLLRVAADQLGS
LGRFRASSDAPPQLNKMGGAAWAKTKARARKAVRKVAFDLVKLYAERTESPGFAFPVDGP
WQNELEDSFPYEPTPDQLKAITEVKRDMEQGKPMDRLVCGDVGFGKTEVALRAIFKAVTA
GRQTALLAPTTVLAQQHWRTLSERFAPYPIKVALLNRFRTASERKEILKGLSDGAIDVVV
GTHQLLGKGTSFKQLGLLVVDEEQRFGVNQKEKIKVLRKDVDVLTLSATPIPRTLYMSLS
GVREMSLITTPPPLRRPIKTHLASLDEEAVRSAIRQELDRGGQVFYVVPRVEGIEEVAGG
LRQMLPGLRLLVAHGQMPEGELESAMVAFNAGEADVMLCTTIVESGLDIPRVNTILIEDS
QKFGLSQLYQLRGRVGRSGIQAHAWLFYPGDASLSDAARQRLRAIQEFAQLGSGYQLAMR
DMEIRGVGNLLGVEQSGQMETIGFDLYMEMLQEELAEIRGQDIPAVDDTQIDLSVTAFIP
ADWVTEADEKMAAYRAAADCDSREGLLQLAADWVDRYGPLPAPVQSLLQLMEIKLLAKRC
GFSRIKPEKPNLVLETPMEEPAFRRLRQGLATHLHGRLVYQAGSGTTAKVLARGLGVLAP
DKQLDELKSWLETMAAQIPDADGLSAAEREAKQQADNQAVLSI
NT seq
3552 nt
NT seq
+upstream
nt +downstream
nt
atgcccctcaccgctttggtgcgccagctgcagcaggtgcccctcaccggcgaggtgctg
gaacgctcccggcggcctgatcgcctgcgattgcagggggccagtcgtggtgcccgggcg
cttttggcctcagccatggcccgctgcgagggcgctcctttgctggtggtggtgcccacc
ctggaagaagccggccgctgggcagccctgctggagttgatgggctggcccaccacacag
ctttatcccaccagtgagggctcgccctacgaagccttcgaccccaccagcgagatcacc
tgggggcagttgcaggtgctcagcgaattggtggatgagcagggcgacggctggcagggg
gtgatcgtggccaccgagcgggccttgcagccccacttgccgccgccggccgtgctggct
gatcagtgcctcaccctgcgcaaaggcgccagcattgatctggaggagctggccgccaac
ctcgcccgcttgggctacgagcgggtctccaccattgagcaggagggcagctggagccgt
cgcggcgacatcgtcgatctgttcccggtcagcgctgaattgccagtgcgattggagttc
ttcggcgaagacctcgagaagttgcgggagtttgatcccgccacccagcgctcgctggat
gctgttgatctggtgcggatcacacccaccggctatgggcccctggtggctgatgccctc
agggccaacctccctgatcagctggatcaattgctcaatgccgaggccatggagcagctg
ctggcaggcgatacccccgaaggcatgcggcgcttgatggggctggcttggcagcagccg
tcgtccctattggattacttgcccgagcacaccttgctggtgctcgatgagcgccgtcag
gccatggcccatggccagcagtggtttgatcacgccgagcagcaccacggcgatgaggtg
gatggcttgctgccaccaacactgcatcggccgatcagcgacacgatcgaggccttggag
gcctttgctggctttgatctggcggaattggctgaaaccgatcagcaccccaacagtttt
gatctgaacagccgggcggttcccgcctaccccaatcagttcggcaagttggccggcctg
atcaaggattttcagcgcgagaaaacccgcgtttggttgctgtcggcccagccctcacgc
gcagtggcgttgctggaagagcacgactgcatcacgcgctttgtgcccaaccccggcgat
caaccagccattgagcggttgatcgaacagaacacgccggtggccctgaagaccaagggc
actgccgagctcgagggattgcagctgccggcctggcgtttggcgctgatcaccgaccgg
gaatttttcggccagcaaaacctcaccgcgagcgggtatgtgcgccgccgccgccgcgcg
gccagccgcacagtcgatcccaaccgcatgcgacagggggatttcgtggtgcaccgcaac
cacggcatcggtcgctttttgaagatggaaaagctggccatcagcggtgatgcccgcgac
tacctcgtggtgcagtacctcgatggtttgctgcgggtggcggccgaccagctgggcagc
ctgggccgcttcagggccagtagtgatgccccgccccagctcaacaagatgggcggtgcc
gcctgggccaagaccaaggcccgtgcccgcaaagcggtgcgcaaggtggcctttgatttg
gtcaagctctacgccgagcgcaccgaatcaccagggtttgccttcccggtggatgggccc
tggcaaaacgaactggaggattccttcccctacgagcccacgcctgatcagctcaaggcg
atcaccgaggtgaagcgcgacatggagcagggcaagccgatggatcggttggtgtgtggt
gatgtgggctttggcaaaaccgaggtggctctgcgcgccatcttcaaggccgtcaccgca
ggtcgtcagaccgccctactggcgccaaccaccgtgctggctcaacagcattggcgcact
ttgagcgaacgctttgcgccttatccgatcaaggtggcgctgctgaatcgcttccgcacg
gcgagcgagcgcaaagagattctcaaaggcctcagtgatggggcgattgatgtggtggtg
gggacccatcaattgctgggcaagggcaccagcttcaagcagctgggcttgttggtggtg
gatgaggagcagcgttttggcgtgaaccaaaaagagaagatcaaggttcttcgcaaagac
gttgatgtcttgaccctctcggcaaccccgatcccgcgcacgctctacatgagcctctcc
ggggtgcgtgagatgagcttgatcaccacgccgccgcccctgcgccgtccgatcaagacc
cacctggcgtcgctcgatgaagaggcggtgcgcagtgccatccgccaagagctcgatcgc
ggcgggcaggtgttttatgtggtgccgcgggtggagggcatcgaggaggtggccggtggg
ctgcgtcagatgcttccaggcctaaggctgctggtggcccatggccagatgccggagggc
gaattggagagcgccatggtggccttcaacgccggtgaggccgatgtgatgctctgcacc
acgatcgttgagagcggcctcgacattccacgggtcaacacgatcctgatcgaagactca
caaaaatttggcctctcacagctctatcaattgcgaggtcgtgtgggccgcagtggcatc
caggcccacgcttggctgttttatccgggtgacgccagcctcagtgatgccgcaaggcag
cggctgcgggcgatccaagaatttgcccagctcgggagcggctatcagctcgccatgcgg
gacatggaaatccgcggcgttggcaatttgctgggggtggagcagagcggacagatggag
accatcggcttcgacctctacatggaaatgctccaagaggagctcgccgagattcgtggt
caggacatcccggcggtggatgacacccagatcgatctaagcgtgacggctttcatccca
gccgattgggtcaccgaagccgacgagaaaatggcggcttatcgcgctgccgcagactgc
gacagccgggagggcctgctgcagctggcagctgattgggtggatcgttatggccccctc
ccggctcctgtgcagtcgctgctgcagctgatggagatcaagctgctggccaagcgttgc
ggtttctcgcgcatcaagcctgaaaaacccaacttggtgttggaaacacccatggaagag
cccgccttccgccgcctgcgccagggtttggccacccacctgcatggccgtttggtgtat
caggccggcagcggcaccaccgccaaggtgctcgcccgcggtcttggggtgttggcgccc
gacaagcagctggatgagctcaagtcttggctggagacaatggcggctcagatcccagat
gccgacgggctttctgccgctgagcgtgaggccaaacaacaggctgacaaccaggctgtt
ttgagcatttga
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