KEGG   Streptomyces yunnanensis: MOV08_06340
Entry
MOV08_06340       CDS       T09344                                 
Symbol
ligD
Name
(GenBank) non-homologous end-joining DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
syun  Streptomyces yunnanensis
Pathway
syun03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:syun00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    MOV08_06340 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:syun03400]
    MOV08_06340 (ligD)
Enzymes [BR:syun01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     MOV08_06340 (ligD)
DNA repair and recombination proteins [BR:syun03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     MOV08_06340 (ligD)
SSDB
Motif
Pfam: LigD_Prim-Pol NAD_binding_2
Other DBs
NCBI-ProteinID: WEB38961
LinkDB
Position
complement(1460453..1461358)
AA seq 301 aa
MSPITVVEGRRLSLTNLDKVLYPGTGTTKGEVLHYCTTTADALLPHLHDRPVSFLRYPDG
PDGQRFFTKNVPPGAPSWVKSCEVPHSRSGPARQVLLQDLASLVWAANLVVELHTPQWTC
GAPGMADRLVFDLDPGAPATVVECCAAARWLRDRLAADGLDAYVKTSGSKGLHLVVPVEP
TPADRTTAYARTLAVEAGAALGDLVTHKMTRALRPGKVFIDFSQNAAAKTTATVYTLRAR
ATPTVSTPVTWDEVAGCTEPGQLTFLLDEIAGRRERYGDLHAPLLSPARARPVPRGDRRP
V
NT seq 906 nt   +upstreamnt  +downstreamnt
atgtcgccgatcaccgtcgtggaggggcggcgcctctcgctgacgaacctggacaaggtc
ctctatcccgggaccggcaccaccaagggtgaggtgctgcactactgcaccaccaccgcg
gacgcgctgctcccgcacctccacgaccgcccggtgtccttcctccgctaccccgacggg
ccggacggccagcgcttcttcaccaagaacgtgccgcccggcgccccctcctgggtgaag
agctgcgaggtcccccattcgaggtcgggtccggcccgccaggtgctcctccaggacctc
gcctcgctggtctgggccgccaacctcgtcgtcgaactgcataccccgcagtggacctgc
ggcgcaccgggcatggccgaccggctggtcttcgacctggacccgggcgcccccgccacc
gtcgtggagtgctgtgccgccgcccgctggctgcgcgaccggctggccgccgacggcctc
gacgcctatgtcaagaccagcggctccaagggcctgcacctcgtcgtgcccgtcgagccc
acccccgccgaccgcaccacggcctacgcccggacgctggccgtcgaggccggtgccgcc
ctgggggacctggtcacacacaagatgacccgggcgctgcggcccggcaaggtcttcatc
gacttctcgcagaacgccgccgccaagacgaccgcgaccgtctacaccctgcgcgcccgg
gccaccccgaccgtctccaccccggtcacctgggacgaggtcgcgggctgcaccgaaccg
gggcaactcaccttcctcctcgacgagatcgccgggcgcagggagcgctacggcgatctg
cacgcgccgttgctgagcccggcccgggcccgtccggtgccgcgcggcgaccggcggccc
gtatag

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