Siansivirga zeaxanthinifaciens: AW14_03035
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Entry
AW14_03035 CDS
T03699
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
sze
Siansivirga zeaxanthinifaciens
Pathway
sze03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sze00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
AW14_03035
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sze03400
]
AW14_03035
Enzymes [BR:
sze01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AW14_03035
DNA repair and recombination proteins [BR:
sze03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
AW14_03035
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
Helicase_C
CarD_TRCF_RID
ResIII
RecG_dom3_C
SBP_bac_3
Motif
Other DBs
NCBI-ProteinID:
AJR02770
UniProt:
A0A0C5WJ88
LinkDB
All DBs
Position
complement(646341..649688)
Genome browser
AA seq
1115 aa
AA seq
DB search
MSKTSISQSYSQALQMQNLQTAISKNQSRVHLKGLVGSSLSFVVSNVFKDTELPFLLIFN
DKEEAAFYLNDLEQLVGDKDVLFYPGSYRRPYQIEETDNANVLLRAEVLNRINSRKKPAI
IVTYPDALFEQVVTRKELERNTLKIAVNDKLSIDFVNEVLFEYQFKRVDFVTEPGEFSVR
GGIVDVFSFSNDEPYRIEFFGDEVDSIRTFDVETQLSIDQIKKISIIPNVANKLLQESRQ
SFLKYIAQKTVIGFKNADLFFSRIDDFYGKAVEAFKELSQDIKHAEPHELFASSRALKEQ
LLDFSILEFGTTAVFGSNSSNIIEFNTKPQPSFNKQFNLLIEDLNANYDKGFTNYIACVS
EQQAKRFHDIFDDSHLEVKPYSAIVLSLHQGFIDLENKIVCYTDHQLFERYHKFNVKNGY
AKKQAINLKELTNLDIGDYVTHIDHGIGRFGGLQKIDVEGKKQEAIKLVYGERDVLYLSI
HSLHKITKFNGKDGKPPKVYKLGSTAWKTLKEKTKARVKHVAFNLIKLYAKRKTEKGFQY
KPDSYMQHELEASFIYEDTPDQSTATADIKADMESERPMDRLVCGDVGFGKTEVAIRAAF
KAVDNGKQVAVLVPTTILAYQHSRSFKERLKDFPVTVDYINRFRTAKEKRETLEGLENGR
VDIIIGTHQLVNKTVKFKDLGLLIVDEEQKFGVAVKEKLKTIKENVDVLTLTATPIPRTL
QFSLMAARDLSVITTPPPNRYPIESHVIRFNEEVIRDAVSYEIERGGQIFFIHNRIENIK
EVAGLIQRLVPDAKIGIGHGQMDGKKLEALMLSFMDGAFDVLVSTTIIESGLDVPNANTI
FISNANNFGLSDLHQMRGRVGRSNKKAFCYFITPEYSAMTDDARKRITALEQFTELGSGF
NIAMKDLEIRGAGDLLGGEQSGFINEIGFDTYQKILNEAIEELKENEFKDLYDDNEDDKV
YVKDVTIDSDFELLFPDDYINNIAERLNLYTQLNGLKTEAELQKFEAELIDRFGELPTQV
EDLLNSVRIKWIATKVGFEKVIMKQGKFIGYFINDQQSNFYQSNNFTRVLQFVQKNPGAC
KMKEKQTRNGLRLLLTFEGVKSVNQVLKAIQPIVA
NT seq
3348 nt
NT seq
+upstream
nt +downstream
nt
gtgagtaaaacaagtatctcgcaatcgtattcacaggctttgcaaatgcaaaatctgcaa
acggctatttccaaaaatcaatctcgtgtacatttaaaaggcctagttgggtcgtcttta
tcgtttgttgtttcaaatgtttttaaggataccgaattgccttttttattaatttttaat
gataaagaagaagccgctttttatctcaacgatttagagcaattggttggtgataaagat
gttttgttttatcccggcagttaccgcaggccttaccaaatagaagaaaccgataacgct
aatgtgcttttacgtgccgaagtattaaatagaattaattcgcgcaaaaaaccggccatt
attgttacctatcccgatgccctgttcgaacaggttgttacccgaaaagaactcgagcga
aatacgttaaaaatagcagttaacgataaattgtctatagattttgtaaacgaagtcttg
tttgaataccagtttaaacgtgtcgattttgttaccgaacccggtgaattttcggttaga
ggtggtattgttgatgtgttttctttttctaacgacgaaccctatcgtatcgaatttttt
ggcgatgaggtagacagcataagaaccttcgatgtcgaaacccaattatcaatagatcag
ataaaaaaaataagcatcatcccaaatgttgccaataaattattgcaggaaagccgccaa
agttttctaaaatatattgctcaaaaaacggttattggttttaaaaacgccgatttattt
ttttctagaattgacgatttttacggaaaagcagtagaggcttttaaagaactttcacaa
gatattaaacatgccgaaccgcatgaattgtttgcttcttctagagctttaaaagagcaa
ctgttagatttttcaattttagaatttggaacgacagccgtttttggaagcaattctagt
aatattatcgagtttaataccaagcctcaaccatcgtttaacaagcaatttaatttatta
attgaagatttaaatgctaattacgataaaggatttaccaattacattgcttgtgtaagc
gaacaacaagccaagcgttttcacgatatttttgatgattcgcacctagaagttaaacct
tatagtgctatagttttgtctttgcatcaagggtttatagatcttgaaaataaaatagtt
tgttatacagaccatcagttatttgagcgttaccacaagtttaatgtaaaaaacggttat
gcgaaaaaacaagccatcaatttaaaagaactcaccaatttagatattggcgattatgtg
acccatatcgatcatggtattgggcgttttggcggtttacaaaaaattgatgtcgaaggt
aaaaagcaagaagctattaaattagtttatggcgagcgcgatgtgctgtatttaagtatt
cactccttacataaaatcaccaaatttaatggtaaagatggcaagccaccaaaggtttat
aaattaggtagtacggcctggaaaaccttaaaagaaaaaacaaaagcccgcgttaaacat
gtggcttttaacttaattaagctttacgccaaacgtaaaaccgaaaaaggctttcaatac
aagccagacagttacatgcagcacgaactggaagcgtcgtttatttacgaagacacgccc
gatcaaagcacagctaccgccgatattaaagccgatatggaaagcgaacgccccatggat
cgtttggtttgtggcgatgttggttttggtaaaactgaagttgccattcgagcagccttt
aaagcagtcgataacggcaaacaagtggctgttttagtgccaaccaccattttagcttac
caacattccaggtcttttaaagagcgtttaaaagattttcctgttacggtcgattatatt
aaccgttttagaacggcaaaagaaaaacgagaaactttagagggccttgaaaatggtcgc
gtcgatattattattggcacccatcaattggttaacaaaacggtgaaatttaaagattta
ggcttgttaattgtcgatgaagaacaaaagtttggtgtggcagtaaaagaaaaactcaag
accataaaagagaatgtcgatgttttaacgctaacagcaacgcccataccaagaacgctt
cagtttagtttaatggctgcaagagatttatctgtaataacaacgccaccaccaaaccgt
tatcctatcgagagtcatgttattcgttttaacgaagaagttattcgcgatgccgtgagt
tacgaaatagagcgtggcggacaaatctttttcattcataatcgtattgaaaatatcaaa
gaagtagccggcttaattcagcgtttagtgcccgatgctaaaattggtattggtcatggc
caaatggatggaaaaaaactagaagccctcatgctttcttttatggatggtgcctttgat
gttttggtaagtacaaccattattgaaagcggattggatgtgccaaatgcgaacaccatt
tttataagtaatgccaataattttggattgagcgatttgcaccaaatgcgcggtcgtgtt
gggcgaagcaataaaaaagccttttgttattttataacacccgaatattctgccatgacc
gacgatgctagaaaacgtattacggctctcgaacaatttacagaactgggaagcggcttt
aacattgccatgaaagatcttgaaattcgtggtgctggcgatttattaggtggtgaacaa
agcggatttataaacgaaattggcttcgatacgtatcaaaaaatattaaatgaagccatt
gaagaactcaaagaaaacgagtttaaagatttgtatgatgacaatgaagatgataaagtg
tacgtgaaagatgttaccatcgattccgattttgaattgttatttccagacgattatatt
aataatattgccgaaagattaaatctttatacccagttaaatggtttaaaaaccgaagcc
gagttacaaaaatttgaagccgaattaatagaccgttttggtgaattaccaacgcaggtt
gaagatttactaaacagtgtgcgcataaaatggatagccactaaagttggtttcgaaaaa
gttattatgaaacaaggcaagtttataggttattttataaacgaccaacaaagtaatttt
taccagagtaacaactttaccagagtgcttcagtttgttcaaaaaaatccgggagcttgt
aaaatgaaagagaagcaaacacgcaatggtttacgattattgcttacttttgaaggtgtt
aaatctgtaaatcaggtattaaaagcaattcagcctatcgtggcgtaa
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