Shewanella zhangzhouensis: K0H63_01060
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Entry
K0H63_01060 CDS
T09194
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
szh
Shewanella zhangzhouensis
Pathway
szh03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
szh00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
K0H63_01060 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
szh03021
]
K0H63_01060 (rpoC)
03400 DNA repair and recombination proteins [BR:
szh03400
]
K0H63_01060 (rpoC)
Enzymes [BR:
szh01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
K0H63_01060 (rpoC)
Transcription machinery [BR:
szh03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
K0H63_01060 (rpoC)
DNA repair and recombination proteins [BR:
szh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
K0H63_01060 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Peptidase_M23
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
QYK05479
LinkDB
All DBs
Position
234023..238237
Genome browser
AA seq
1404 aa
AA seq
DB search
MKDLLKFLKQQGKTEEFEGIKIGLASPDLIRSWSFGEVKKPETINYRTFKPEREGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPVAHIWFLKSL
PSRIGLMLDMTLRDIERVLYFESYVVIEPGMTSLERGQMLTEENYLDALEEYGDEFEAKM
GAEAVLDLLRAIDLEKEIEQMREELPSINSETRRKKVTKRLKLIEAFYTSGNKPEWMILK
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
ESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPT
LRLHQCGLPKKMALELFKPFIYGKLEGRGLATTIKAAKKMVEREVAEVWDVLDEVIREHP
VMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYISRERVNGRGEAMAFESVAEAEKAYRVG
AAELHARVKVRITETIIGENGERTKQRRIVDTTVGRAILSQILPAGLSFDLVNQDMGKKQ
ISKLLNTCYRQLGLKDTVIFADQLMYTGFQYATISGASVGINDMVIPEEKYSLVADAEAE
VIEIQEQFQSGLVTAGERYNKVIDIWASANEKVSKAMMENLSSETVINRHGEEEKQKSFN
SIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPIVANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVIIEDDCGATEGLSMKPLIEGGDVVEPLRERVL
GRVVAEDVMYPGTDEVLAPRNTLLDEAWCDKLEQHSVDEVQVRSVITCETDFGVCAKCYG
RDLARGHIINMGEAIGVVAAQSIGEPGTQLTMRTFHIGGAASRASAENSVQVKNAGTLKL
HNAKYVTNSDGKLVIVSRSSELAIIDELGREKERYKVPYGTVLDTKEGAEVNAGQIIANW
DPHTHPIITEVAGSIKFVDMIDGVTITRQTDELTGLSSIVVLDVGQRTSAGKEMRPAVRL
VDDNGNDLTIPGTDVPAQYFLPGNAIVNLDDNAKISVGDALARIPQESSKTRDITGGLPR
VADLFEARRPKEPAILAEISGTISFGKETKGKRRLVITPNDGGDAYEEMIPKWRNLNVFE
GEKVERGEVIADGPESAHDILRLRGIHNVANYIVNEVQDVYRLQGVKINDKHIEVIIRQM
LRKCIITQAGDSEFLEGEQVEVARVKIANRDLEAAGKLPAKFERELLGITKASLATESFI
SAASFQETTRVLTEAAVGGKSDNLRGLKENVIVGRLIPAGTGFAYHKNRAKARAAGEETA
APTITASEAEQNLADLLNLAGSQE
NT seq
4215 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacttattaaagtttctgaaacagcagggtaagaccgaagagtttgaaggtatc
aagattggtctggcttcgcctgacctgatccgttcatggtcttttggtgaagttaaaaag
ccagaaaccatcaactaccgtaccttcaagcctgagcgtgaaggtctgttctgtgcccgt
atctttggtcctgtgaaggactacgagtgtctgtgtggtaagtacaagcgtctgaagcac
cgcggtgttatctgtgagaagtgtggcgttgaagttacccagaccaaggtgcgtcgtgag
cgcatgggtcacatcgaactggccagcccagttgcccacatctggttcttgaagtcactg
ccgtcccgtatcggtctgatgctggatatgacactgcgtgacatcgagcgcgtgctgtat
tttgaatcttacgtagtaatcgagccaggcatgaccagcctggagcgcggtcagatgctg
accgaagaaaactacctggatgcgctggaagaatacggtgacgaattcgaagccaagatg
ggcgccgaagccgtactggatctgctgcgtgccatcgacctcgagaaagaaatcgagcag
atgcgcgaagagctgccttctatcaactcagagacccgtcgcaagaaagtgaccaagcgt
ctgaagctgattgaagccttctacacctctggcaacaagccagagtggatgatcctgaaa
gtgctgccagttctgccaccggatctgcgtccgttggttccgctggacggcggtcgtttt
gcgacttcggatctgaacgatctgtatcgccgcgtgatcaaccgtaacaaccgtctgaag
cgtctgctggatctggctgcgccagacatcatcgtacgcaacgaaaagcgtatgctgcag
gaatctgtggatgcgctgctggacaacggccgtcgtggccgtgccatcaccggctctaac
aagcgtcctctgaagtccctggccgacatgatcaagggtaagcaaggtcgtttccgtcag
aacctgctgggtaaacgcgttgactactcaggccgttcggtaattaccgtaggtcctact
ctgcgtctgcatcagtgcggtctgccgaagaaaatggctctcgagctgttcaagcccttc
atctacggcaagctggaaggtcgtggcctggccaccaccatcaaagccgccaagaagatg
gtagagcgtgaagttgccgaggtatgggacgtactggatgaagtgatccgcgaacaccca
gtgatgctcaaccgtgcaccaacactgcaccgtctgggtattcaggcgttcgaacctgta
ctgattgaaggtaaggcaatccaactgcacccattggtgtgtgcggcatacaacgccgac
ttcgacggtgaccagatggcggtacacgtacctctgactctggaagctcagctggaagcc
cgtgcgctgatgatgtctaccaacaacatcctgtcgccagccaacggtgagccaatcatc
gttccgtctcaggacgtggtattgggtctgtactacatcagccgtgagcgtgtaaacggt
cgcggtgaagccatggcgttcgagtctgttgctgaagctgaaaaagcttaccgcgtaggt
gctgccgagctgcacgcccgcgtgaaagtacgtattaccgaaaccatcattggtgaaaac
ggtgagcgtaccaagcagcgtcgtatcgtggacaccactgtaggtcgtgccatcctgtct
caaatcctgccagccggtctgtctttcgacctggttaaccaggacatgggcaagaagcag
atctccaagctgctgaacacctgttaccgtcagctgggtctgaaagataccgttatcttc
gctgaccaactgatgtacaccggtttccagtacgccaccatctccggtgcctctgtgggt
atcaacgacatggtgatcccagaagagaaatactctctggtggccgatgccgaagccgaa
gttatcgagatccaggagcagttccagtctggtctggtaaccgccggtgagcgttacaac
aaggtcatcgacatctgggcaagtgccaacgagaaggtgtccaaagcgatgatggaaaac
ctgtcttccgagacagtgatcaaccgtcatggcgaagaagaaaagcagaagtcgttcaac
agcatctatatgatggccgactcaggcgcacggggtagtgccgctcagatccgtcagttg
gcgggtatgcgtggtctgatggccaagccagacggctccatcatcgaaacgcccatcgtg
gcgaacttccgtgaaggtctgaacgtactccagtactttatctctacccacggtgcccgt
aagggtctggcggataccgcacttaagacagcgaactccggttacctgactcgtcgtctg
gtagacgtggctcaggatctggtgatcatcgaagacgactgtggcgcgaccgaaggtctg
tccatgaagccgctgattgaaggtggtgacgtggttgagccgctgcgtgagcgcgtgctg
ggccgtgtggttgccgaagatgtgatgtacccaggtactgacgaagtgctggcacctcgc
aacactctgctggacgaagcctggtgtgacaagctcgaacagcacagcgttgacgaagta
caggttcgctcggtaattacctgtgaaaccgactttggtgtgtgtgccaagtgttacggc
cgtgacctggcccgtggtcacatcatcaacatgggtgaggccatcggtgtggttgccgct
cagtcaatcggtgaaccaggtacacagctgacgatgcgtacgttccacatcggtggtgcg
gcgtctcgagcgtctgccgaaaacagcgtacaggtgaagaacgccggtaccctgaagctg
cacaacgccaagtacgttaccaacagcgacggcaaactggttatcgtgtctcgttcttct
gagctggccatcattgatgagctgggtcgtgagaaagagcgctacaaggtaccatacggt
accgtgctcgacaccaaagaaggtgctgaggtgaatgccggccagatcattgcgaactgg
gatccgcacactcacccaatcatcactgaagtggcgggtagcattaagttcgtagacatg
attgacggtgtaaccattacccgtcagaccgacgaactgaccggtctgtcttcaatcgtg
gtactggacgtgggtcagcgtacctctgccggtaaagaaatgcgtccagcagttcgtctg
gtagatgacaacggcaacgacctgactatcccaggcacagacgttcctgcgcagtacttc
ctgccaggcaacgcgatcgtgaacctggacgacaacgccaagatcagcgtgggtgacgcc
ctggcacgtattcctcaggaatcgtccaagacccgcgacatcaccggtggtctgccacgg
gttgctgacctgttcgaagcccgtcgtccgaaagagcctgcgatcctggccgaaatcagc
ggtactatctccttcggtaaagaaaccaagggtaagcgccgtctggttatcaccccgaat
gacggtggcgatgcttacgaggaaatgattcctaagtggcgtaacctgaacgtgttcgaa
ggtgaaaaggttgagcgtggtgaagttatcgccgacggcccagagtcagcccatgacatt
ctgcgtctgcgtggcatccacaacgtggccaactacatcgtgaacgaagtacaggacgtt
taccgtctgcagggtgtaaagatcaacgacaagcacatcgaggtgatcattcgccagatg
ctgcgtaagtgcatcatcacccaggccggtgattccgagttcctggaaggtgaacaggta
gaagtggcacgcgtgaagattgccaaccgcgatctggaagctgccggtaagctgccagcc
aagttcgaacgcgaactgctgggtattaccaaggcgtctctggcgactgagtccttcatc
tctgcggcctcgttccaggaaaccacccgcgttctgaccgaagcagctgttggcggcaag
tctgacaacctgcgtggtctgaaagagaacgtgattgtgggtcgtctgatcccagccggt
accggtttcgcttaccacaagaatcgcgccaaggcgcgtgctgccggtgaagaaactgcg
gctccgaccattactgccagcgaagctgagcagaacctggcggacctgctgaatctggcc
ggaagccaggagtaa
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