Shewanella zhangzhouensis: K0H63_07185
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Entry
K0H63_07185 CDS
T09194
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
szh
Shewanella zhangzhouensis
Pathway
szh03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
szh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
K0H63_07185 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
szh03400
]
K0H63_07185 (mfd)
Enzymes [BR:
szh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
K0H63_07185 (mfd)
DNA repair and recombination proteins [BR:
szh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
K0H63_07185 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
DEAD
TRCF
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
SNF2-rel_dom
UB2H
ERCC3_RAD25_C
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
QYK06591
LinkDB
All DBs
Position
complement(1662706..1666173)
Genome browser
AA seq
1155 aa
AA seq
DB search
MSSFTVDRLPKTPAKGRVSAVRLPGGVARALTLAEMTCSYAGTTLIVTSDTPTALVLEAE
LGYLLKSRGIDICLFPDRETLPYDSFSPHQDLISQRLETLSNLERGKGRLVIVPLTTLMV
RLPPKAFLAANVLILKKGDRYQLQQMRQHLVDTGYHLVEQVYEHGEFAIRGSILDIFPSG
ASEPLRIELFDDEVESIRHFDPETQRSSGEVDSIRMLPAREFPTDSQAIEGFRQRYRRTF
ETVNNAAESVYQLVSRNLMPAGIENYLPLFFDDTATLFDYLPEELQIITTGALHQAAEHH
LTEIHSRYEDRRVDPLRPLLPPKALYQTTEELFARFKLYPRIDLSGDEGDKALEATPLPD
IRANHKLKQPLESLANWAQAGQRIAFVAESEGRREALLELLGKAGLKPKLYGHLDEFLAS
DSRHGLVVAPLAMGCQLKIGKSQVAVVCETELFGERVSQERRRDKQRQLSQDVLIKNLAE
LKVGQPVVHLEHGVGLYQGLETLDTGGLVAEYLKLEYAGGDKLYVPVSALHLISRFAVGN
DESAPLNRLGNESWSKAKRKAIEKIRDVAAELLDVYARREARPGEPCTLDEAEYAQFAQG
FPFEETVDQETAIKAVIDDMCQPKAMDRLVCGDVGFGKTEVAMRAAFLAVSSGKQVVVLV
PTTLLAQQHFENFKDRFADWPVRIEVMSRFRTAKEQQAVLSAMGEGKVDIVIGTHKLLNT
ELNFESLGLLIIDEEHRFGVRQKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSII
ATPPAKRLAVKTFVREYDKATVREAILREILRGGQVYYLHNQVETIEKTAQDIRELLPEA
RVVTAHGQMRERDLERVMSDFYHQRFNVLVCTTIIETGIDVPSANTILIDRADHFGLAQL
HQLRGRVGRSHHQAYAYLMTPHPKLMTVDARKRLEAIDALEDLGAGFMLATQDLEIRGAG
ELLGDEQSGHISRIGFSLYMEMLEGAVKALKQGKEPSLRQMLGAQCEIDLRIPALLPDDY
VNDVNMRLSLYKRIAGCDTEKAVDEMKVELIDRFGLLPDATRNLLTMTVQKHRATRLGAS
KIEMHARGGSIEFGEEHRVDPGFIIGLLSSQPQVYRMDGPNKLRFTMPCETAKERLELLE
LLLEQLEQHSVGEGK
NT seq
3468 nt
NT seq
+upstream
nt +downstream
nt
atgagctcatttacggtagaccgtcttcccaagactccggccaaaggccgggtgtctgct
gtcaggctgcctggcggcgttgcccgcgccctgacactggccgaaatgacctgcagttac
gcgggtaccaccctgatagtgaccagcgacacgcccacagccctggtgctggaggctgag
cttggttacttgctcaagtcccgtggtatcgatatttgcctgtttcccgaccgggaaacc
ctgccctacgacagcttttcgccccatcaggatctgatttcccagcgcctcgaaaccctg
tccaatctggagcgtggcaaggggcggctggttatcgtgccactcacgaccctgatggtg
cgcttgccccccaaggcgtttttggccgccaatgtgcttatccttaaaaaaggtgaccgc
tatcagctgcagcagatgcgacagcatctggtcgacacaggctatcacctggttgagcaa
gtatatgagcacggtgaatttgccatccgtggatcgattctggatatttttcccagcggc
gccagtgagccactgaggattgagctattcgacgatgaagtggagtcgattcgccatttc
gaccctgagactcagcgctccagcggcgaagtagatagtattcgcatgttgcctgcacgg
gagtttcccaccgacagccaggccatcgaaggctttcgtcagcgctaccgccgcaccttt
gagacagtcaacaacgcggccgagtcggtataccagttggtcagccgcaatctgatgcca
gccggcatcgaaaactacctgccgctgttttttgatgacaccgccaccctgttcgattat
ctgcctgaagagctgcaaatcatcaccacaggggcactgcatcaggcggcggaacatcac
ctgactgaaatccacagccgctacgaagaccgccgggttgacccgctgcggcccttgctg
ccgcccaaggcactgtaccagacaacagaagagctgtttgcccgttttaagctgtatccc
aggatagatttgtccggtgatgaaggagataaagccctcgaagccactcccctgcccgat
atacgtgccaatcacaaactcaagcaaccgctcgagtcgttggccaactgggcccaggca
ggtcagcgcatcgcctttgtggccgaatcggaaggccgcagggaagcgctgctggaactc
cttggcaaggcaggcctaaagcccaaactctatggtcatttggatgagtttctggcctca
gacagccgtcacggcctggtcgtggcgccgctggctatgggctgtcagctcaaaattggc
aaatcccaggtggctgtggtctgtgaaaccgagctttttggtgagcgggtttcccaggag
aggcgccgggacaaacagcgtcagctgagtcaggatgtgctcatcaaaaacctggccgaa
ctcaaggtgggtcagccagtggtacaccttgagcacggtgtgggcctgtatcagggattg
gaaaccctcgacaccggtggcctggtggccgagtacctcaagctcgaatacgccggtggc
gacaagctctatgtgcctgtatcagcgctgcaccttatcagccgttttgcggtgggtaac
gatgagtcggcgccgctcaatcgcctcggtaacgaaagctggagcaaggccaagcgcaag
gccattgaaaaaatccgcgacgtggcggcggagctgttggacgtttatgcccgccgcgag
gctcgccccggtgaaccctgtaccctggatgaagccgagtacgcgcagtttgcccagggc
ttcccctttgaggaaaccgtggatcaggaaactgccatcaaggcggttatcgacgatatg
tgccagcccaaggccatggaccgactggtgtgtggtgatgtgggctttggtaaaaccgaa
gtggccatgcgcgccgccttccttgcggtatccagcggaaaacaggtggtggtattggta
cccaccacgctgctggcacagcagcattttgaaaactttaaagaccgcttcgccgattgg
ccggtacgtatcgaagtgatgtcgcgcttcagaaccgccaaagagcagcaggcagtgctg
tcggccatgggcgaaggcaaggtcgatatcgtgattggcacccataagcttttgaatacc
gagcttaactttgagtcgctcggtctgcttatcatcgacgaagagcacagatttggggta
cgccagaaagagcgtatcaaggccatgcgcgccaatgtggatatcctgaccctgaccgcc
acccccattccccgcaccctgaacatggccatgtcaggcatgcgtgacctgtctattatc
gccacgccaccggccaagcgtctggcggttaaaacctttgtgcgtgaatacgacaaggcc
acagtgcgcgaggcgatcctgcgggaaatcctccgtggtggtcaggtgtattatctgcac
aatcaggttgaaaccatcgaaaagaccgcgcaggacattcgagagctgctgcccgaggcg
agggtcgtgactgcccacggacagatgcgtgaacgcgatctggagcgggtgatgtcggac
ttctaccaccaacgctttaacgtgttggtgtgtaccaccatcatagaaacgggtatcgat
gtccccagtgccaacaccatattgatagacagggccgaccatttcggtttggcgcagctg
caccagttgaggggccgcgttgggcgctcccatcaccaggcttatgcctacttgatgacc
ccccatcccaaattgatgacggtagatgcccgcaaacggctcgaggccattgatgcgttg
gaggatttgggtgcgggctttatgctcgcgactcaggatctggagatccgcggcgccggt
gaactgcttggcgatgagcaaagtggccatatttccaggattggcttcagcctctatatg
gaaatgctggagggcgccgtaaaggcactcaagcagggtaaagagccatcgctcaggcaa
atgctgggcgctcagtgtgaaatcgacttacggatcccggcgctgctgcccgacgattac
gtaaacgatgtgaatatgcgactgtcgctctacaagcggattgcgggctgtgacaccgaa
aaagccgtggacgaaatgaaggtcgaacttatcgaccgtttcggcctcttgcccgatgcc
acccgtaacctgttaaccatgacagtacagaagcacagggccacccgactgggtgccagt
aaaatcgagatgcacgcccgtggcggcagtattgagtttggtgaagagcacagggtagac
cccggctttatcatcggcttgctttcgtctcagccccaagtctatcgtatggacggcccc
aataaactcaggttcaccatgccttgcgaaaccgccaaggaacgattggaactcctggaa
ctgctgctggagcagctcgaacaacacagcgttggagaaggaaaataa
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