Candidatus Nitrosocosmicus oleophilus: NMY3_00137
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Entry
NMY3_00137 CDS
T04185
Name
(GenBank) Putative DNA ligase-like protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
taa
Candidatus Nitrosocosmicus oleophilus
Pathway
taa03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
taa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
NMY3_00137
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
taa03400
]
NMY3_00137
Enzymes [BR:
taa01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
NMY3_00137
DNA repair and recombination proteins [BR:
taa03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
NMY3_00137
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
LigD_N
DNA_ligase_A_C
mRNA_cap_enzyme
DNA_ligase_OB_2
Motif
Other DBs
NCBI-ProteinID:
ALI34351
UniProt:
A0A654LVU8
LinkDB
All DBs
Position
complement(112093..115074)
Genome browser
AA seq
993 aa
AA seq
DB search
MLDEYKRKRNFRASPEPNGNNSLNKENFADPAAASISTDDHSRSKSRPRFVIQKHEATRL
HYDFRLESTKEDVLLSWVIPKGPSLDPSIKRLAIQTEDHPVEYLSFEGVIPEGNYGAGTV
IVWDIGEYSLEKNSSTKYPTKEHLEEIPEVSDVSELEKKYGKITFVLYGKKLRGKFSLVK
TRTKNQWLLIKLKDEFARGSNNSDKSDEKDITKNRPESVLTGKKNSDLTQYKSDKTVKKD
LKTGNNIIKYSAEIPENPNTLDTLGDHNLDTVNLVSTNRSLKQISFEEIRPMLPSLTDEP
FNNKDWIFEIKWDGVRAITLVDRLTKTCTIKSRRGDTITLRYPELVHTFKNALKEDMFKD
FVILDGEIVILDNDGSPNFQNHQKRMNIDSIKSIEILSELYPAVYYVFDILYLDNNNLMQ
LPFTERRKILVKLVKNSNSKIRISDFVEEFGIDAFETIRKMGLEGIIGKQRNSKYHSGSR
TRDWLKIKNIKTQDCLVIGYTWGEGNRKSYFGSLLLAAIDNTQNNTQTNTNNNNKNVNSK
NDIDNLRFIGHTGSGFSFENLSLIHKKLREIEIPYCPVDYIPYLNRETVWVRPIVVIEVK
FNGWTGNKIMRAPIFLRLREDKPPGQCVIEFSSPMHSPKFADIIKKEERGDLKITNNKNG
DPIADLDQQYSNLKKEFWSATEYRSAITKGDLMEYYDKISELLLPYLRDRPVSLSRYPDG
IYGKAFYQKDWKNIKPYYVRTVKVYSESNNDEINYIVCNNKETLLWLVNLGCIEIHPWNS
RVNNYDQCNKMDVIETEECGLNYPDFIVFDLDPYINIDNENESKEPAYSLGAFRTTVDIA
LSLQGIFDELNIKSYLKTSGKTGLHIFVPIINKYTHKQTREFAQIISQILNKRNPGQITT
EWKTTNRKGKVFLDYNQNSIGKTLASVFSTRPVEDAIVSVPLTWEELADIIPTDFTIKTV
PGLYKRKINPWKDILSHKQDLEEILARISYFKV
NT seq
2982 nt
NT seq
+upstream
nt +downstream
nt
atgttagacgagtacaagaggaaaagaaattttagggcttctcctgagcctaatggaaac
aatagtctgaataaagaaaattttgcagatccagctgctgcaagtatctcaaccgacgat
catagccgatcaaaatcaagacctcggtttgtgatccaaaaacatgaagcgacaagattg
cattatgattttagattggaatctactaaagaggatgttctcttatcttgggtcatccct
aaggggccatccttggatccatccataaagagattggcaatacaaactgaagatcaccct
gtggaatacttgtcctttgaaggagttatccctgaaggaaactacggtgctggaactgta
atcgtgtgggatattggcgaatacagcctggaaaaaaactcctcaacgaaatatcctacg
aaagaacacctagaggaaataccggaagtttcagacgtgtctgaactagaaaaaaaatat
ggaaagattacatttgtgctatatgggaagaaattaagaggcaaattttctttggtgaaa
actaggactaaaaatcaatggctattaattaaattaaaggatgaatttgcacgtggctca
aacaatagcgacaagagtgatgaaaaagatataacaaaaaatagacctgaatcggtgttg
acaggcaaaaaaaatagtgacttaacgcaatacaaatctgataagactgtaaaaaaagat
ttgaaaactggtaacaatatcataaaatactctgcagagatcccagagaatccaaatacg
ctggatacattgggagatcataatcttgacactgtgaacctagtgtcaactaatcgatcg
ttaaaacaaatttcctttgaagaaataagacctatgttaccatctcttacagatgaacca
tttaacaataaggattggatatttgaaataaagtgggatggggtaagggcaatcactctt
gtggataggctaactaaaacttgtacaattaaatcccggagaggcgacacaattacccta
cgctatcctgaacttgtgcacacttttaaaaatgccctcaaagaagacatgttcaaagac
tttgtcatattagacggggaaattgttattttggataatgatggttcccctaattttcaa
aaccatcaaaagaggatgaatattgattctatcaagagcattgaaattttgtccgaactt
tacccagcagtttattatgtgtttgatatcttatatttagacaacaataacctcatgcag
ctaccatttacagaaagaagaaagatactagtcaaactggttaagaattcaaactcaaaa
atacgaatatctgactttgtcgaggaattcgggatagatgcttttgagaccataaggaag
atgggcttggaaggaataattggaaagcagaggaacagcaaatatcattctggtagccgt
acaagagactggcttaaaataaagaatatcaaaacccaggactgtttggtgataggctat
acatggggcgagggcaaccgaaaaagttactttggatctctcctgctagcggctatcgat
aatactcaaaacaatacccaaactaataccaataataataataagaatgtcaattccaaa
aatgacattgacaacttaagattcataggtcatacgggtagtggatttagtttcgaaaac
ctctcattaattcataaaaaactaagagaaatagaaattccctattgtcctgttgattac
attccatatcttaacagggaaacagtatgggtaagacccatagtagtaatagaagtgaaa
tttaacggttggaccggtaataagataatgcgggcaccgatatttctaagactaagagaa
gacaagccgccaggccaatgtgtcattgagttttcgagtccaatgcattcaccaaagttt
gcagatatcataaagaaagaagagcgtggtgacttaaaaataactaataacaagaacggt
gatcctatagctgaccttgaccaacaatattccaatttgaaaaaggaattttggagcgca
acagaatatcgttcagctattacaaaaggagatttaatggagtattacgataaaataagc
gaacttcttctaccttaccttcgagaccggcccgtctctcttagtagatacccagatggc
atatatggaaaggcgttttatcaaaaggattggaaaaatataaaaccatactatgttaga
acagtcaaggtatattcagaatcaaataatgatgagatcaactatatagtatgtaataac
aaggaaactttactatggcttgtaaatttgggatgcattgaaatacatccatggaatagt
agggttaataattatgatcaatgcaataagatggatgtaatagaaacggaagaatgtgga
ttaaattatcctgattttatagtttttgatttggatccatacataaatattgataatgaa
aatgaatctaaggaaccagcatatagtttaggggccttcagaacgacagtggatattgct
ctaagtttgcagggtatttttgatgaattgaatattaaatcatatcttaaaacttcggga
aaaacaggattacacatctttgttccaataatcaacaagtacacacacaagcaaacgagg
gaatttgctcaaataatatctcaaatcctcaataaacgcaatccaggtcaaattactacg
gaatggaaaacaacgaatagaaaaggaaaagtgtttttagattataatcaaaattctatt
gggaaaacactagcttctgttttttcaacaagacccgtagaagatgctattgtttcagtt
ccacttacatgggaagaactagcagatattatacccactgattttacgataaagaccgta
cccggcctttataagagaaaaataaatccctggaaggatattttatcacataaacaagat
cttgaagaaatacttgcacgcatttcctatttcaaagtttaa
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