Thermoplasma acidophilum: Ta1293
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Entry
Ta1293 CDS
T00037
Name
(GenBank) RNase PH (yeast SIK6) related protein
KO
K11600
exosome complex component RRP41
Organism
tac
Thermoplasma acidophilum
Pathway
tac03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tac00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Ta1293
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tac03019
]
Ta1293
Messenger RNA biogenesis [BR:
tac03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
Ta1293
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
Ta1293
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-ProteinID:
CAC12415
UniProt:
Q9HIP2
LinkDB
All DBs
Position
1344005..1344751
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AA seq
248 aa
AA seq
DB search
MKRMEANKIKLINEDNLRLDGRSFNELRPIKIQAGVLNRADGSAYIEWGGNKIMVGVYGP
KEAYPKHSQDIDHAIVKARYNMAAFSVDERKRPGPDRRTMEISKVISEALSSSIMIEQFP
RAEIDVYIEVLQADAGTRIAGLTAATVALADAGVPMRDMVVGCTAGKVDGHMVLDLSKEE
DNYGEADIPIAIMPKTGDIVLMQMDGDVTEDELYQAMDMIFEATKRISQIQREALLNKYK
IQDIGEGE
NT seq
747 nt
NT seq
+upstream
nt +downstream
nt
gtgaaaaggatggaagccaacaaaataaagctgatcaatgaagataatcttaggctggat
ggtagatctttcaatgaactgcgcccgataaagatacaggcaggagtgctcaacagggcg
gatggatctgcatacatagaatggggaggaaacaagataatggtcggtgtttatgggccg
aaggaggcttatcccaagcactcccaagacatagaccatgccatagttaaagccagatac
aacatggcagcattctcggtcgatgagcgaaagaggccggggccggacaggaggacaatg
gagatatcaaaggtaatatcggaagccctgagctcatcgataatgatagagcagttccca
agggccgagattgacgtttacatagaggttctccaggccgatgccggtacgaggatagct
ggccttacggccgcaaccgttgcacttgctgacgcaggtgtcccgatgcgggatatggtc
gtcggctgcacggcgggaaaggtagacggccacatggtgcttgatctgtccaaagaggag
gacaactacggtgaggcagatataccgatagccataatgccaaagaccggtgatatcgtt
cttatgcagatggatggggacgtcaccgaggatgagctttaccaggccatggatatgata
ttcgaagccaccaagagaatatcacagatccagagggaggccctcctgaacaagtacaag
atacaggatatcggagagggtgagtga
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