Thermodesulfobium acidiphilum: TDSAC_0270
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Entry
TDSAC_0270 CDS
T05396
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
taci
Thermodesulfobium acidiphilum
Pathway
taci03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
taci00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
TDSAC_0270
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
taci03400
]
TDSAC_0270
Enzymes [BR:
taci01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
TDSAC_0270
DNA repair and recombination proteins [BR:
taci03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
TDSAC_0270
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
Helicase_C
UvrB_inter
CarD_TRCF_RID
ResIII
SecA_DEAD
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
AWB09653
UniProt:
A0A2R4VYN2
LinkDB
All DBs
Position
complement(267691..271029)
Genome browser
AA seq
1112 aa
AA seq
DB search
MKFLDELFNKVLEKCITNYKSNIINVQFETSLFLAYYFSQKNKKALFVYKNEKISQDAYN
LLKRNSNTNSEEEINFSLYPAWDILFGERLSPSFRIISQRIIAQKKYSVLISSTKAVLSP
KEKNFQSLFLKKNVEIDREKLIDLLSKNYTRKSLCELPGEFAVRGMLLDVFPFYSENPVR
LIFSDNTINAIKYFNPEDQRTLREIESFDLIVIETLKFSPDEKEKIRRFFNALSKEERNI
ISEEITNIENDTNFYGIENYLYFKNDLKSILDDFNMVFFVDKDQVQSEITRLLQEIKKLR
SFQIENKIYVKIPSFIYNLFRDPENLFAEDFNTKERSKDIVDFNPELIKPLVKEVRAAPP
LPRGGTENIKNTLNWYLNANYTVEVSMNHIPNCLKDLENPQLIFSEKRYPAGIEILGIDK
KLAKKYSIRENLIIFTSQEFSTIQTKEKTTRRKSISSLQELQYNDLVVHRDHGIGRFIGL
KLMNFTKVQREYAQILYKDDDILYIPVEEFTRLSKYIGPDDAELSSLRSNDWTSKKKRAK
DFAEKIAHEIVFIEASRRNVQRPIYSNTKDPTMEELELKESFGYDETPDQERAIEDVFLD
MSKPYPMDRLIVADAGFGKTEIAIRAAYRAVLASRQVALLAPTTLLADQHYRTFKNRFDP
LGVRVEVLSRISKSGNKNKILKDLKENKIDIIIGTHSLLSKNIKFKNLGLLIIDEEQKFG
VMQKEQFKKIRTELDVLSLSATPIPRTLNMALSGLRDISTIFTPPKNRMPIRSIVSVFKD
VIVREAILRELDRGGQIFVVDARISNLNNLKEKIENIVGNVSCAILHGQKSPQEISTTLE
RFLNKEIDLLISTAILESGLDIPEVNTIIINNADLFGLSELYQLRGRVGRSFKQGYAYFL
YSSDKRITEDAKRRLETIQRNSSLVSGFNISLKDMEIRGTGNVLGTEQHGHMENIGVELF
TEMIAEELARIRGTVKEFTKIKAEIELYIDKNYINEEGLRIDLYKRLQKVESEEELFSLQ
EEIEDRFGKMPKELSNLFLLTLIKLKATKIGIKELNILKDSIKIAPNNNEYIEKIKKSGF
FVKATKEEIVIRPSSPADSFGFAISLLSLLSS
NT seq
3339 nt
NT seq
+upstream
nt +downstream
nt
ttgaaatttttggatgaattatttaacaaggttcttgaaaaatgtatcacaaattataaa
agtaatataatcaacgtacaatttgaaacgtccttgttcctcgcatactatttttcacaa
aaaaacaaaaaagctctttttgtatataaaaatgagaaaatctctcaagacgcttacaat
ttgctcaaaaggaattcgaatactaattcagaagaagagattaatttttcgttgtatcca
gcctgggacatcctctttggagaaagactctccccgtcctttagaataatttcccaaaga
ataattgctcaaaagaaatattctgtgctgataagttctacaaaggcagtactctctccc
aaagaaaaaaattttcaaagtctttttttgaaaaaaaacgtagaaattgatagagaaaaa
ttgatagatttactaagtaaaaattatacaagaaagagtctttgtgaattgcccggagaa
tttgcggtaagaggaatgcttttagacgttttcccattctactcagaaaatccagtcaga
ttaatcttcagcgacaacactattaacgcaataaaatattttaacccggaagatcaaaga
actctaagagaaattgaaagttttgatttaattgttatagaaacgctaaaattttcacca
gatgaaaaggaaaaaatcagaaggtttttcaatgccctatcaaaagaagaaagaaatatt
atttctgaagaaataacaaacatagaaaatgacactaacttttacggcattgagaattat
ctgtattttaaaaacgatctaaaatctatattagatgactttaatatggtcttctttgtc
gacaaagatcaagttcaatcagaaataaccaggcttttgcaggaaattaaaaaactaaga
agctttcaaattgaaaacaaaatatatgtcaaaattccatcctttatctacaatttattt
agggatcctgaaaatttatttgcagaagattttaatacaaaagaacgctctaaagatata
gttgattttaatccagagttaataaaacctcttgttaaggaagttagagcagcacctcct
ttaccaagagggggtactgaaaatataaaaaacactcttaactggtatttaaatgccaat
tatacagttgaagtatctatgaatcatatacctaactgcctaaaggaccttgaaaaccct
caattaatattctcagagaaaaggtatccagcaggcattgagatattgggtatagacaaa
aaattggcaaaaaaatacagcatcagagaaaacttaataatctttacgtcacaagagttt
tctacaatacagacaaaggaaaaaacaacaagacgcaaaagtatatctagcctccaggaa
ctccaatacaacgatctggtagtacacagagatcatggaataggtagatttatcggacta
aagctcatgaattttaccaaagtccaaagagaatatgcacaaattctatacaaggatgat
gacatcttatacattcctgttgaagaatttaccagattatcaaaatatattggcccagat
gatgcagaactttctagtttaaggtcaaacgattggacttcaaagaaaaaaagagctaaa
gattttgccgaaaaaatagctcatgaaatagtttttatagaagcctcaagacgaaatgtt
caaagacctatatattcaaacaccaaagaccctactatggaagaactagaactaaaagag
agctttggttacgatgaaactccagaccaagaaagggctattgaggatgtttttctagat
atgtcaaaaccatatccaatggatagattgatagtagctgatgctggctttggaaaaaca
gaaatagcaataagagcagcatatagagcagtactagcatcaagacaggttgcgttactt
gcccctaccacattgttagccgatcagcactatagaactttcaaaaatagatttgatccc
ctaggggtaagagtggaagttttgtcaagaatttcaaaatcaggaaataaaaacaaaatc
ctaaaagatctgaaagaaaataaaatagacatcattattggaacacactcgttattatca
aaaaatataaaatttaaaaatttaggtttattaatcatagatgaagaacaaaagtttgga
gtcatgcaaaaagaacagtttaagaagattagaacagaactagacgttttgtctttgtct
gcaacgcctatacctcgaactctgaatatggcattaagcggactaagggacatatcaacc
atctttactccaccaaaaaatagaatgccaattcgttcaatagtttcagtttttaaagac
gtaattgtcagagaagccatactaagagaacttgacagagggggtcaaatttttgtcgtc
gatgcaagaatttctaatttaaacaatttaaaagaaaaaatagaaaatatagtaggaaat
gttagctgcgcaatattacacggccaaaaaagtcctcaagaaatatcaaccacactagag
agatttttaaacaaagaaatagaccttctcatttcaacagcgatattagaatctggttta
gatattcctgaggtaaatactataattataaacaatgcagatttatttggactttctgaa
ctctatcaactaagaggcagggtaggcaggagcttcaaacagggttatgcgtatttttta
tatagttcagataaaagaattacagaagatgcaaaaagaaggctggaaaccatccaaagg
aattcttcacttgttagcggctttaatataagtctgaaagacatggaaattagagggact
ggaaatgttctggggacagaacaacacggacatatggaaaatattggagttgaactgttc
acagagatgatcgcagaagagcttgcaagaataagaggaaccgttaaggaatttactaaa
ataaaagctgaaattgaactctatatagacaaaaattatataaatgaagagggattaagg
attgatctttacaaaagacttcaaaaagttgaaagtgaagaagaacttttttcgttacag
gaagaaattgaagacaggtttggtaaaatgccaaaagagctatcgaatctcttcttgctg
acattaataaaattaaaggccacaaaaattggaataaaggaattaaatattctaaaagac
agcatcaaaatagctccaaataataatgaatatattgaaaaaattaagaagagtggcttt
tttgttaaagctacaaaggaagaaatagtaattaggccatccagtccagctgattcattt
ggctttgctatttccctactttcactactatctagctaa
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