Trichoplax adhaerens (placozoan): TRIADDRAFT_50031
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Entry
TRIADDRAFT_50031 CDS
T01069
Name
(RefSeq) hypothetical protein
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
tad
Trichoplax adhaerens (placozoan)
Pathway
tad03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
tad00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
TRIADDRAFT_50031
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tad03400
]
TRIADDRAFT_50031
Enzymes [BR:
tad01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
TRIADDRAFT_50031
DNA repair and recombination proteins [BR:
tad03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
TRIADDRAFT_50031
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_IV
DNA_ligase_A_C
BRCT_2
BRCT
mRNA_cap_enzyme
RNA_ligase
Motif
Other DBs
NCBI-GeneID:
6751687
NCBI-ProteinID:
XP_002111010
JGI:
50031
UniProt:
B3RS92
LinkDB
All DBs
AA seq
924 aa
AA seq
DB search
MATKTVADEVPFFDLCTLLERISQASGKEKKKKIYSDFLSSWRTAHFKLYGKSSTEDSFF
SAMRLLLPQMDKERLAYGMKETALAKYYIDILSISKESPAAQKLMNYRAPAAAKQDAGDF
ASVAFFVLRTRCPEKGTLSIADVNECLDNIAMANSQRKRDDVRNNLRKLLRNTCAMEQKW
LIRMIMKELKVGLSENSIFSVFHPDASDLFNVSSSLSKVCSDLMDPDVRLNETSIELFVP
FRPMLAERCPLQQVEKLMNHEMFYIECKADGDRMQLHKDGNKYMYFSRSSKEYTSSFGAT
PDEGSFTPFIVNVFSSQVQSAILDGEMVGYDMENDCYVPRGENIDVKAVGRTSAIIQQCY
MVFDILMLNGKKLANHSLHERLGYLKQVFTPIPGRIMVVKQRQATSKKDVLDSLNEAIDT
REEGIIIKNPISTYKPDQRKGSGWFKIKPEYVDSLSDQLDLLIIGGYFGVGRRGGLISHF
LLGVAVPPENPSEHPKVFQSFCKVGSGYTIAELKELGEKLKPYWKPMNPKKLPPYFQLMS
EKPDLWIEPIHSKIVQIKAAEIVPSTDKFKCNCTLRYPRVELVREDKYWYECMDLDELDQ
LKSIAEGRLAYQHADETSETLMFGPSKKRQKANIRPETVCTIAPQFRTADISDVSQVFSG
KEFCVVSGPKHNPKASVEKRIVENGGTFVQNPGMETFCVITDRKTIRARNIISQNIYDVV
KVDWLLDSLAAGRCLEWQPNQVIHSSPKTAEVFAKEYDKYGDSYTKDIDNPVALKAIFDK
INNEDDLVSTATQKEICDVEMRYFPDESPLGLFRRCRAYFDWYRQVDNDATRIRDSPLDL
IGLNFRYYGGTISSILDRHVTHIVFDPSDLSRMQKLRKLDKNRKLLRHFVGSEWVTASID
AASQLSERNYEPLMPRDNSSDSEY
NT seq
2775 nt
NT seq
+upstream
nt +downstream
nt
atggctaccaaaaccgttgcagacgaagttcctttcttcgatctgtgcacattactggag
cgtattagtcaagccagcggcaaggagaaaaagaaaaaaatttattccgattttcttagc
tcttggaggacagctcatttcaaactgtatggaaagtcatccacggaagatagctttttt
tctgcaatgagattattattaccacaaatggataaagagcgcttagcatacggcatgaag
gaaactgctttagctaaatattacattgatatcttgagtatcagtaaggaaagcccagct
gctcaaaagctgatgaattatcgtgcaccagcagctgccaagcaagatgcaggcgatttt
gcaagcgtcgctttctttgttctgagaacaagatgcccagagaaaggaactttatctatt
gccgatgtaaacgagtgtttagacaatatagctatggctaattcacaaagaaagcgagat
gatgtcagaaataatctacgaaagttgttacggaatacatgtgctatggaacaaaaatgg
cttattagaatgattatgaaagagttaaaagtaggccttagcgagaattctattttcagc
gtttttcatcccgacgcctccgatctgttcaacgttagcagcagcttatcaaaggtatgc
tccgaccttatggatcctgacgtgagacttaatgaaacctcaatagagctattcgtacca
tttcgtcctatgttagctgaaagatgccctttgcaacaagttgaaaaactaatgaaccat
gaaatgttttatatagaatgcaaagcagatggagatagaatgcagctgcataaggacgga
aataaatacatgtatttttctagaagttctaaagaatacacttcttcatttggagcaacg
cctgatgaaggatcctttaccccatttatcgtaaacgtttttagtagtcaagttcaatct
gccattctagatggcgagatggttggttacgatatggaaaatgactgttatgttcctcgt
ggtgagaatatcgatgtcaaagcagtaggcagaacgtcagctattatacaacaatgctat
atggtatttgatattttaatgttgaacggtaaaaaattagcaaaccattccttgcatgaa
cgactcggatacttaaagcaagtattcactcctatacctggtcgaatcatggtagtcaaa
caacggcaagctacaagtaaaaaagatgttttagactcacttaatgaagcaatagatact
agggaagaaggcatcatcataaaaaacccaatttccacttacaagccggatcagagaaaa
ggcagtggatggtttaaaattaagccagaatatgtagatagcttgagcgatcaattggat
ctattaataattggaggctactttggcgttggccgacgtggtggcctaatttctcacttt
ttacttggggtagctgtacctccggaaaatcctagtgaacaccctaaagtatttcaatct
ttctgcaaggtggggtcaggatatactattgctgaattaaaagagcttggagagaaatta
aaaccctattggaaacccatgaatcctaagaaacttccaccatactttcaattgatgtct
gaaaagccagacttatggatagaaccgattcattctaagattgtacaaatcaaagcagcc
gaaattgtaccttcaactgacaaatttaaatgcaattgtaccttgcggtacccaagggta
gaacttgttagagaagacaaatattggtatgaatgcatggatctagatgaactggatcaa
ctaaaatctattgcagaaggaagattggcgtaccaacatgcagacgaaaccagcgaaaca
ttaatgtttgggccttccaaaaaaaggcaaaaagcaaatattcgacctgaaactgtttgc
acaattgctcctcaatttcgaacggcagatattagtgacgtctcacaagtattttcgggt
aaagaattttgtgtagtgagtggaccgaaacacaatccaaaagcctcagttgaaaagcga
attgtagaaaacggtggtacatttgtgcaaaatccaggaatggaaacattttgtgttata
actgatcgtaaaacgatacgtgctcgaaatatcattagccaaaatatttatgatgtcgta
aaagttgattggctgttagattcattggctgcaggtagatgcctagaatggcaacctaat
caagtaattcacagttcgcctaaaactgcagaagttttcgcgaaagaatacgataaatac
ggagatagttacactaaagatattgacaaccctgtcgctttaaaagcgatcttcgataaa
attaacaatgaggatgatttagtaagtactgcaacacaaaaagaaatttgcgatgtagag
atgaggtacttccctgacgaatctcccctaggactctttagaagatgcagggcttacttc
gattggtatcgtcaagttgacaatgacgcgacccgcatacgagatagtcccctagacttg
attggacttaatttcagatattatggaggaactatatctagcattttagatcgtcatgtt
actcatatcgtgtttgatccaagcgatttatctcgaatgcaaaaactgcgaaagttagac
aaaaacagaaagttattacgtcacttcgtcggctcagagtgggtgacagcttcgattgat
gccgcttctcaattaagtgaaagaaattatgagccattaatgcctcgagataattcaagt
gactctgaatattga
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