Triticum aestivum (bread wheat): 123047439
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Entry
123047439 CDS
T07757
Name
(RefSeq) general transcription and DNA repair factor IIH subunit TFB2-like isoform X1
KO
K03144
transcription initiation factor TFIIH subunit 4
Organism
taes
Triticum aestivum (bread wheat)
Pathway
taes03022
Basal transcription factors
taes03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
taes00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
123047439
09124 Replication and repair
03420 Nucleotide excision repair
123047439
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
taes03021
]
123047439
03400 DNA repair and recombination proteins [BR:
taes03400
]
123047439
Transcription machinery [BR:
taes03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
123047439
DNA repair and recombination proteins [BR:
taes03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
123047439
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tfb2
Tfb2_C
Helicase_C_3
Motif
Other DBs
NCBI-GeneID:
123047439
NCBI-ProteinID:
XP_044326927
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Position
2B:complement(789515935..789533240)
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AA seq
500 aa
AA seq
DB search
MPQQALLLDSSLMNCIICNCCIILHPSREHKKRRRLQGRRRRGPGAAAKMPQVMVVARNF
MDMVAALPAAKLDMLYDSAFICEAVLRSFPPLAKKYVIQMLYVSAPMLAAAMQEWVLDEY
ASKHKVAIDRLLQLRVFVEVRDRRKEVSYKMNNKFQANMQKYLVSGGCLPREPLPFSVTG
RLPTLVELENYALDQWECFLLQLINSSQVEKGTTFSSSMMKTFQRGLLSSRDGEAAKLSE
NGFQFLLMETNAQLWYIMREYISSAEERGVDPTDLISFLLELSFHTQGAAYSLSTLTEVQ
RVAIMDLMELGLVKLQQGRKDSWFIPTKLATNLSSSLSDSAASKEGIVVVETNFRLYAYS
ASKLHCEILRLFSRVEYQLPNLIVGAITKESLYGAFDNGITAEQIISFLQQNAHPRVIDK
IPIVPENVTDQIRLWENDRNRVEMVLSHVYEDFPSKDMFEQCCDHARDNGYLLWEDAKKM
RLIVNAEFHQEMREFLRRQR
NT seq
1503 nt
NT seq
+upstream
nt +downstream
nt
atgccccagcaagcattgctactcgattcctcgttgatgaactgtattatatgcaattgc
tgtattatcttacacccctcgcgcgagcacaagaagaggaggcggctccaaggcaggcga
cggcggggcccaggcgctgctgcaaagatgcctcaggtgatggtggtcgcgcggaacttc
atggacatggtggccgcactgcctgccgccaaactagacatgctctacgattccgccttc
atctgtgaggctgtactcaggtcgttcccaccgctggcaaagaagtacgtgattcagatg
ttgtacgtgtcggcaccgatgcttgctgcggctatgcaggagtgggtgctggatgagtat
gcctccaagcacaaggttgccatcgataggttgctccaactcagggtatttgtggaagta
cgtgacagaaggaaggaggtgagctacaagatgaataataagtttcaggctaacatgcaa
aagtatttggttagtggcgggtgtttgccaagggaaccgctaccattcagtgtcactggc
agattgcctacactggtggaactagaaaattatgctcttgatcaatgggagtgcttcttg
ctgcaattgatcaactcgtctcaagttgagaaagggaccactttcagctcgtctatgatg
aagacgttccagcgaggtcttctgagttcaagggatggtgaagctgcaaagttaagtgag
aatggcttccagtttctgctgatggagacaaatgcacagctttggtatataatgagagaa
tacatttcatccgcagaggaacgcggggtggatcccacggacttgatatcatttctcttg
gagcttagttttcatacacaaggagcggcttacagcctaagtactctgacagaagtccaa
agagttgcaattatggatctgatggagctcgggttagtcaaactgcagcagggccggaaa
gatagctggttcatacctacaaaattggctacaaatctctcatcgagcttgtcagattca
gctgctagcaaagagggtattgtggttgtggagacaaactttaggttgtatgcgtactct
gcttccaagctgcactgtgaaattctacgtcttttttcaagggtagagtatcaactacca
aaccttattgtgggagctattacaaaagaaagtctgtatggtgcatttgataacgggatc
accgctgaacagataatttcattccttcagcaaaatgcccaccctcgtgtcatcgacaaa
ataccgatagtcccagagaatgttacagatcagattaggctgtgggagaacgaccgtaac
agggtcgagatggtcctgtcacacgtatacgaagatttcccgagcaaggacatgtttgag
caatgctgtgaccacgcaagggataacgggtacttgctgtgggaggacgcgaagaagatg
cgattgatagtgaacgcggagttccaccaagaaatgcgggagttcctccgcaggcaaaga
tga
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