KEGG   Thermosphaera aggregans: Tagg_0212
Entry
Tagg_0212         CDS       T01237                                 
Name
(GenBank) DNA ligase I, ATP-dependent Dnl1
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
tag  Thermosphaera aggregans
Pathway
tag03030  DNA replication
tag03410  Base excision repair
tag03420  Nucleotide excision repair
tag03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:tag00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    Tagg_0212
   03410 Base excision repair
    Tagg_0212
   03420 Nucleotide excision repair
    Tagg_0212
   03430 Mismatch repair
    Tagg_0212
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:tag03032]
    Tagg_0212
   03400 DNA repair and recombination proteins [BR:tag03400]
    Tagg_0212
Enzymes [BR:tag01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     Tagg_0212
    6.5.1.6  DNA ligase (ATP or NAD+)
     Tagg_0212
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     Tagg_0212
DNA replication proteins [BR:tag03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    Tagg_0212
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     Tagg_0212
DNA repair and recombination proteins [BR:tag03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     Tagg_0212
   NER (nucleotide excision repair)
    Other NER factors
     Tagg_0212
   MMR (mismatch excision repair)
    Other MMR factors
     Tagg_0212
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase
Other DBs
NCBI-ProteinID: ADG90492
UniProt: D5U042
LinkDB
Position
188747..190582
AA seq 611 aa
MSQVQRDLPFRVIVDFFKKLETTTARTQLTAILVNLFKQTPPDVIDKVVYLIQARLWPDW
KGLPELGIAEKLLIKAISLSTNSSEKVVEEILKSKGDAGLAVEALKTRSLEKSKGVTLFT
FAEKKQELTVNKVYEVLTRIALAQGEGSKDLKIRLLAGLLSDANPEEAKYIVRFVEGKLR
LGIGDATIMDALSIVYAGGAHLRPLIERAYNLRADLGEVAKILASQGVEAIKQITPMVGI
PIRPMLAERLSDPKEILEKVEGEAFVEFKYDGERAQIHKDGNKIVIYSRRLENITHQYPD
VVEMALKNIKAEKAILEGEIVAYDPSTGELKPFQELMHRKRKYDIHVAVKENPVKVFLFD
LLYEEGVDYTVKRLIERRKRLEEIIVQTEEFRVAEYIRTSDPGELEKFFLQAISEGAEGV
MVKALHEGSVYQAGTRGWLWIKFKRDYRSEMVDTVDLVVVGAFYGRGRRGGKFGTLLMAS
YNPSNDTFETVCKVGSGFTDEDLDKIPELLKPFIRDRKPLRVVAEMEPDVWVEPALVAEI
IGAELTLSPIHTCAYGKIKPEAGISIRFPRFIRWRDDKKPEDATTSDELVEMYKLQLKRI
GEKVAQPGEET
NT seq 1836 nt   +upstreamnt  +downstreamnt
atgtcccaagttcaacgagacttgccttttagggttattgttgatttcttcaagaagctg
gagacaacgacggcaagaacacagttaacggcaatcctggtgaacttgtttaagcagact
cctccagatgttatagataaagtcgtctacttgatacaagctaggctgtggcctgactgg
aaaggattacccgagctcgggattgctgagaaattattgataaaagcaatatccttatca
actaattcctctgagaaggttgtagaggagattttaaaatccaaaggagatgcgggctta
gcggttgaagcattgaagactcgttcattagagaaaagcaagggagtgacgctcttcact
tttgctgagaaaaagcaggagcttacggtaaacaaggtttacgaggttctaaccaggatt
gcgctggcacagggtgagggcagtaaagacttgaagataaggcttttagccggactgtta
tccgatgctaacccggaggaagccaagtatattgtgaggtttgtagaggggaagctgagg
ctgggcataggagacgctacgataatggacgcgctcagcatagtctacgctggaggcgca
cacttacgccccctcatcgagagagcttacaatctaagagcggatctaggggaggtagcg
aaaatacttgcctctcagggtgtagaggctattaaacagataactcccatggttgggatt
ccgataaggccaatgcttgcggagaggctgagcgatcccaaggaaatattggaaaaggtc
gagggggaagcgtttgtagagttcaagtatgatggagagagggctcagattcacaaagat
ggaaacaaaatcgttatttattctcgaagactggaaaacataactcaccagtatcctgat
gttgtcgagatggctttgaaaaacataaaggctgagaaggcaatactggagggagagata
gtcgcatatgatcccagcactggcgagttgaagcctttccaagagctgatgcataggaag
aggaaatacgacatacatgtcgcagtgaaggaaaacccggttaaagtcttcttgttcgat
cttctctacgaggaaggcgtggactatactgtaaaaaggcttattgaaagaaggaagagg
cttgaggaaataatcgttcaaaccgaggaattcagggttgccgaatacattaggacctcc
gatcccggcgagctagaaaaattcttccttcaagcaataagcgagggtgctgaaggagtc
atggttaaggctctgcatgaaggatcggtttaccaggctggtacaaggggttggttgtgg
attaagtttaagcgagactataggagtgaaatggtagacactgtggatttggtagtggtt
ggcgcgttttacggcagagggagaaggggaggcaagttcggcactttactcatggcttca
tacaatcccagtaatgatacttttgaaacagtatgtaaggttggctccggattcaccgac
gaggacttggataagattcccgaattgctaaagcccttcatcagggatagaaagccttta
agagttgtagcggagatggagccggatgtttgggttgagccagccttggttgcggaaata
ataggtgctgaactaaccctctcgccgatacacacctgcgcctatggtaagatcaagcct
gaggcaggcatctcgataagatttccgagattcatccggtggagggatgataaaaagccc
gaggatgctactacgagtgatgagcttgtggaaatgtacaagctccagcttaaaagaatt
ggtgaaaaggttgcccaacctggtgaggaaacctga

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