KEGG   Candidatus Nitrosotenuis cloacae: SU86_001025
Entry
SU86_001025       CDS       T03883                                 
Name
(GenBank) ATP-dependent DNA ligase
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
tah  Candidatus Nitrosotenuis cloacae
Pathway
tah03030  DNA replication
tah03410  Base excision repair
tah03420  Nucleotide excision repair
tah03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:tah00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    SU86_001025
   03410 Base excision repair
    SU86_001025
   03420 Nucleotide excision repair
    SU86_001025
   03430 Mismatch repair
    SU86_001025
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:tah03032]
    SU86_001025
   03400 DNA repair and recombination proteins [BR:tah03400]
    SU86_001025
Enzymes [BR:tah01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     SU86_001025
    6.5.1.6  DNA ligase (ATP or NAD+)
     SU86_001025
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     SU86_001025
DNA replication proteins [BR:tah03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    SU86_001025
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     SU86_001025
DNA repair and recombination proteins [BR:tah03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     SU86_001025
   NER (nucleotide excision repair)
    Other NER factors
     SU86_001025
   MMR (mismatch excision repair)
    Other MMR factors
     SU86_001025
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase
Other DBs
NCBI-ProteinID: AJZ75201
UniProt: A0A3G1B2N2
LinkDB
Position
complement(725245..727011)
AA seq 588 aa
MRFSEIADTFEKMSATTKRLELTQHLVELFQKTPPEIISKIVYLIQGKLRPDFEGIELGL
AEKLAIHALSKSSGIPIKKINSTYAEDGDLGGAAAKIMEQKTQTTFLAQDITAERVYETL
YKIAKLEGQRSQDMKMKYVSSLLNDATPQEAKFILKIAMGTLRLGIADNTVMDALAISYT
GSKENRQRLEAAYNVSSDLGAVAETISRNGLKGLDEFHVKVFSPIRPMLAERVKSEAEAI
EKLGGEFAAEYKLDGERVQIHYKDNRMVLYSRRLENITSYYPDILENLPKVLKTTDVILE
AEAVAINQDSGEFLPFQELMHRRRKYDIDRIVEKYPITVNLFDVLYLNGKDLLNEPYKIR
RKKLEEITSENEYAKIVTQVIVHAENEIEDFLENGINAGCEGLMLKSLDAPYRAGARGNN
WLKLKREYRNELGDSLDLVVIGAFFGKGRRTGKYGTLLLASYNQDRDAFESICKVGTGFT
DENLDQFYQILQDKVTLKKNPRIESGMEPDVWFEPELVIEIVASEITLSPVHTTAKDSIR
TGSGLALRFPKFTGKIRMEKAPEDASTDQEVIALYKNQKKVTQNVSDA
NT seq 1767 nt   +upstreamnt  +downstreamnt
atgcggttttcagagattgcagatacttttgaaaaaatgagtgctacaacaaaacgacta
gagctaacacagcacctagtggaattattccaaaaaacaccgccagaaatcatctcaaaa
attgtctatcttatccagggaaagctaagaccagactttgagggaatagagttaggattg
gcagaaaaacttgccattcatgcgctatccaaatcatctggaattccaataaaaaagatc
aattccacatatgctgaagacggagatcttggaggagcagctgccaaaataatggagcaa
aaaacccagaccacgtttttggcccaagacatcacagcagagcgtgtttacgaaacacta
tacaaaattgcaaagctggaaggtcagcgctcccaagacatgaaaatgaaatatgtctca
agcctcctaaatgacgcaacgccgcaagaggcaaaattcattctcaaaatagcaatgggt
acgctgcggctagggattgcagacaatacggtaatggatgcacttgccatttcctatacc
ggctctaaggaaaacaggcaacgactagaagcagcatacaatgtgtcatcggacttgggt
gcggtagcagaaacaatttcacgtaatggtttgaagggactggacgaatttcatgtcaag
gtgtttagtccgatcaggccaatgcttgcagagcgtgttaaatcagaggcagaggcaatc
gaaaaacttggtggcgaatttgcagctgaatacaagcttgatggggaaagagttcaaatt
cactacaaggacaatcgcatggttttgtattcaagaagattggagaacatcactagttac
tatccagacattttagagaatctgccaaaggtgttaaagacgacggatgtgattttagaa
gcagaagcagttgccataaatcaagactcgggtgagtttttgccatttcaggaattgatg
caccgcagacgaaaatacgatattgacagaattgtggaaaaatatccaatcacagtaaac
ctatttgatgtgttgtatctgaatgggaaagatctactaaacgaaccatacaaaatacgc
agaaagaaactagaggaaataacaagcgaaaatgaatacgccaaaatagtaacgcaagta
atagttcatgccgaaaacgaaatagaagactttttggaaaatgggatcaatgcgggctgt
gaagggttgatgctcaagagtttggatgcaccatacagagcaggcgcacgtggaaacaac
tggcttaagctaaagcgggaatatcgaaatgagcttggcgatagtttggatttggtggta
ataggcgcattctttggcaaaggcagacgaaccggaaaatacggaacgcttttgcttgca
tcatacaatcaagaccgtgacgcatttgagagcatttgcaaagtcggtaccgggtttaca
gacgaaaacttggatcagttctaccaaatactacaagacaaagtcacactcaaaaaaaat
ccccgaatcgaaagcggaatggagccagatgtgtggtttgaaccagagctagtaattgag
atagttgcatcagaaataacactgagtccagttcacaccactgccaaggactccatcaga
acaggtagtggacttgcactgagattccccaaattcacaggtaaaattagaatggaaaag
gcaccagaagatgcatccacggatcaagaagtcatcgcactatacaagaatcagaaaaaa
gtgacccagaacgtatcggatgcatga

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