Tamlana carrageenivorans: C1A40_05895
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Entry
C1A40_05895 CDS
T05295
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
taj
Tamlana carrageenivorans
Pathway
taj03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
taj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
C1A40_05895 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
taj03400
]
C1A40_05895 (mfd)
Enzymes [BR:
taj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
C1A40_05895 (mfd)
DNA repair and recombination proteins [BR:
taj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
C1A40_05895 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
RecG_dom3_C
SBP_bac_3
Motif
Other DBs
NCBI-ProteinID:
AUS05026
UniProt:
A0A2I7SGI3
LinkDB
All DBs
Position
complement(1309976..1313326)
Genome browser
AA seq
1116 aa
AA seq
DB search
MSKSTLSEIYAQALQTQNLQHAIAQNESKIHVKGLVGSSLSFVISSVFKNANKPFLLIFD
DKEEAAHYLNDLEQLCGSKDVLFYPGSYRRPYDIEETDNANVLLRAEVLNRINSQKKPAI
IVTYPDALFEQVVTRKELERNTLKVGVNDNLSIDFVNEVLFEYKFKRVDFVTEPGEFSVR
GGIVDVFSFSHDEPYRIEFFGDEVDTIRTFDVESQLSVEQIKKINIIPNVANKLMQESRQ
SFLKYIAQKTVIGIKNADLLFSRIDDFYEKAETAFKALSEDIKHSKPEALFCDSKLLKRQ
LLDFSIMEFGNSFVMATNSKPYTTITFEVSPQPSFNKQFNLLIDDLNSKHNQGYTNYIVC
VSEQQARRFHDIFDDAEEEVAYKTVVLSLHQGFVDHDTKTVCYTDHQIFERYHKFQLKNG
YAKKQAITLKELTNLDIGDYVTHIDHGIGRFGGLQKIDVEGKMQEAIKLVYGERDVLYLS
IHSLHKITKFNGKDGKPPKIHKLGSTAWKTLKQKTKARVKHVAFNLIKLYAKRKTEKGFQ
YRPDSSMQHELEASFIYEDTPDQSTATADIKLDMESERPMDRLVCGDVGFGKTEVAIRAA
FKAVDNGKQVAVLVPTTILAYQHSRTFKKRLRDFPVTVDYVNRFRTAKEKRETLEALEQG
KVDIIIGTHQLVNKNVKFKDLGLLIVDEEQKFGVAVKEKLKAMKDNVDVLTLTATPIPRT
LQFSLMAARDLSVITTPPPNRYPIESHVIRFAEETIRDAISYEIERGGQVFFIHNRIENI
KEVAGMLQRLVPDAKIGVGHGQMEGKKLEELMLAFMDGAFDVLVSTTIIESGLDVSNANT
IFINNANNFGLSDLHQMRGRVGRSNKKAFCYFITPDYSAMTEDARKRISALEQFTELGSG
FNIAMKDLEIRGAGDLLGGEQSGFINDIGFDTYQKILNEAIEELKENEFKDLYDEPEEDK
IYVKEVTIDTDFSLLFPDDYVNNIAERLNLYTQLNNLKSEDELHIFETQLVDRFGELPTQ
VVDLLNSVKIKWLATKIGFEKIVMKQGKLIGYFINDQQSRFYQSPGFTKVLQFVQTHPGV
CKMKEKQTRQGLRLLLTFDKIKSVKQALEAIEPIVK
NT seq
3351 nt
NT seq
+upstream
nt +downstream
nt
gtgagtaaatctaccctctctgaaatttatgcacaggctttgcaaacgcaaaatctgcaa
catgctattgcccaaaacgaaagtaaaattcatgtaaaaggattagttggttcttccttg
tcgttcgtcatttccagtgtttttaaaaatgccaataaacctttccttttaatttttgac
gataaagaagaggccgcgcattatttaaacgatttggaacaactttgtggtagtaaagat
gttttgttttatccaggaagttatcggcgaccttatgatattgaagaaaccgataatgct
aatgtccttttgcgcgctgaggttttaaaccgaatcaactcccaaaaaaagccagccatt
attgtaacctacccagacgccctttttgagcaggtagttacacgtaaggaactcgagcga
aacacactaaaagtaggggtgaacgataatttatctattgattttgttaacgaagtgttg
tttgagtataagtttaaacgggttgattttgttaccgaaccgggcgagttttcggtgcgt
ggtggtattgttgatgttttttctttctcgcatgacgaaccctatcgtattgaatttttt
ggcgatgaggtagacactattcgtaccttcgatgtggaatctcaattatcggtggagcag
ataaaaaagattaatattattcccaatgtggcgaataaattaatgcaggaaagccgccaa
agtttcttgaaatacatcgctcaaaaaaccgtgatagggataaaaaatgccgatttactg
ttttcaagaattgatgatttttacgaaaaagccgaaacagcttttaaagccctttccgaa
gatataaaacacagcaagcccgaggctttattctgcgattcaaaactattgaaacgtcaa
cttttagatttttcaatcatggagtttggcaattcatttgttatggccacgaattccaaa
ccctatactaccataacgtttgaagtttccccccaaccttcattcaataagcaatttaat
ttgttaattgacgacctaaacagcaaacataatcagggatataccaattatattgtatgc
gttagtgaacagcaggctagacgttttcatgatatttttgatgatgccgaagaagaagta
gcttataaaactgttgtgctatccttgcatcagggttttgtagatcatgatacgaaaacg
gtatgctacaccgatcatcaaatttttgaacgttatcataaatttcagcttaaaaatggt
tacgctaaaaagcaggccatcaccttaaaagaacttacaaatttagatattggcgattat
gttacccatatcgatcatggtataggacgctttggagggcttcaaaaaattgatgtagaa
ggcaaaatgcaggaggctattaaactggtttatggcgagcgcgatgtgctgtatttaagt
attcattccctgcataaaatcaccaaatttaatggtaaagatggcaaaccacctaaaatt
cacaaattaggtagtacggcctggaaaactttaaagcaaaaaacgaaagcgcgtgttaag
cacgttgccttcaatttaattaaactctacgccaaacgtaaaaccgaaaaaggttttcaa
taccgtccagatagttctatgcaacacgagttggaggcgtcttttatttatgaagatacc
ccggaccaaagcaccgctactgccgatattaaattagatatggaaagcgaacgccctatg
gatcgcttagtttgtggtgatgtaggttttggtaaaaccgaagtagctattcgtgctgca
tttaaagctgtcgacaatggtaagcaagtggccgttttagtgcctacaaccattttagcc
tatcagcattccagaacgtttaaaaagcgtttgcgagattttcctgttacagtcgattat
gtgaatcgatttagaaccgccaaagaaaaacgcgaaactctcgaggctttagagcagggt
aaagtagatatcattattggaacccatcaactggttaacaaaaatgtaaaatttaaagat
ttaggactgctcattgtcgatgaagaacaaaaatttggagtggctgtcaaagaaaaatta
aaggctatgaaggataatgtggatgtgttaactcttaccgccacaccaattcctagaacc
cttcaatttagtttaatggcggctagagatttatcggtgattaccacacctcctccaaac
cgataccctatagaaagtcatgtgattcgttttgccgaagaaaccattcgagatgctata
agttacgagattgagcgcggcggacaagttttcttcattcataaccgtattgaaaatatt
aaagaagtggcgggcatgcttcaacgcttggtacccgatgctaaaattggcgtgggccac
gggcaaatggaaggtaagaagttagaagaactcatgctggcctttatggatggcgctttc
gatgtgttggtaagtaccacgattattgaaagtgggttggatgtatctaacgcgaacacc
atttttattaataatgccaataattttggtttaagtgatttgcaccaaatgcgtggtcgt
gtaggtcgtagcaacaaaaaagccttctgttattttataacgcccgattattcggccatg
accgaagatgccagaaaacgtatttcggccctagagcagtttaccgaattaggtagtggt
tttaatatcgctatgaaagatttggaaattcgtggagcaggcgatttattgggtggtgaa
caaagcggatttattaatgatattggttttgatacctatcagaaaattttaaatgaagcg
attgaagaactcaaagaaaatgagtttaaagatttatatgatgaacccgaagaagataaa
atctacgttaaagaggtaactatcgataccgatttctcgctgctttttcccgatgattac
gtgaataatattgctgaacgattaaatttatatacacagctaaataatttaaaatcagaa
gacgaattgcatatctttgagacacaattagtcgatcgttttggcgagttacccactcag
gttgtcgatttgttgaacagcgtgaaaatcaaatggctggctaccaaaattggatttgaa
aaaattgtgatgaaacaaggcaaactcatagggtattttataaacgatcaacaaagtaga
ttctatcagagtcctggatttaccaaggttttacaatttgttcaaacacatccaggtgtt
tgtaaaatgaaagaaaaacaaacacgtcaaggtttgcgtttgttgttaaccttcgataaa
atcaaaagtgtaaaacaagcattagaagccatcgagcccattgtaaaataa
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