Tyto alba (Barn owl): 104363074
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Entry
104363074 CDS
T07816
Symbol
UPF3A
Name
(RefSeq) regulator of nonsense transcripts 3A isoform X1
KO
K14328
regulator of nonsense transcripts 3
Organism
tala
Tyto alba (Barn owl)
Pathway
tala03013
Nucleocytoplasmic transport
tala03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
tala00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
104363074 (UPF3A)
03015 mRNA surveillance pathway
104363074 (UPF3A)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tala03019
]
104363074 (UPF3A)
Messenger RNA biogenesis [BR:
tala03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
104363074 (UPF3A)
mRNA cycle factors
P-body specific factors
104363074 (UPF3A)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Smg4_UPF3
Motif
Other DBs
NCBI-GeneID:
104363074
NCBI-ProteinID:
XP_042661859
LinkDB
All DBs
Position
Unknown
AA seq
440 aa
AA seq
DB search
MRSEREAGPGPGQGGGRDKRLMDVSLRRESPRRDPDAPPNPPPPPSPTSPLPPPLHPATG
KQREEKKTALSKVVIRRLPPCLTKEQLEEQLHPLPAHDYFEFCTADPSLYPHLYSRAYIN
FRNPEDILLFRDRFDGYVFIDNKGLEYPAVVEFAPFQKISKKKLKKKDAKAGSIEDDPEY
RKFLESYCADEEKICANPEILLGEIEAKTRELIARRTTPLLEYIKNRKLEKQRIREEKRE
ERRRRELEKKRLREEEKRKRREEERRKRKEVEKQKKISEKEIRIKLLKKPEKGDELSSEK
HKEKGEEADIEENKWDKSPGSGSIKSKSLEGSLKEPKEKSQNDSDKEQRDLERRFREKEP
ERQRYRLDDGRKHRAHYEFDKFVRRNEEELKWGKGYNQDRGKKGNYNYSFTVEAVDKLGS
PSHAVIPARSSHSNTYGIYK
NT seq
1323 nt
NT seq
+upstream
nt +downstream
nt
atgcggtcggagcgggaggccgggccgggcccggggcagggcggcggccgcgacaagcgg
ctcatggacgtctcgctgcggcgggagtcgccgcgccgcgacccggacgctccgcccaac
ccgcctccgcccccatccccgacctccccgctcccgccgccgcttcacccggcgaccggt
aaacagcgagaggagaaaaaaacggcgctgagcaaagtagttattcgacggcttcctcct
tgtctaactaaggagcaactggaggaacagctacatcctctacctgcccatgattatttt
gagttttgcactgctgatcccagcctgtatcctcatctctactcaagagcatacattaac
tttagaaatcctgaggacatccttctttttagagatcgctttgatggctatgtcttcatt
gataataaaggtttggagtatcctgcagtggttgaatttgctccattccagaagatttca
aaaaagaagctgaaaaagaaagatgccaaagctgggagcattgaagacgatccagaatat
aggaaatttttagagagttattgtgctgatgaagagaaaatctgtgccaatcctgagatt
ctcttgggagagattgaggccaaaacaagggaactcattgctagaagaacaacacccctt
ttggaatatattaaaaatagaaaattagaaaagcagagaatacgagaagagaaaagagaa
gaacgaaggcggagagaattggagaagaaacgcctgcgggaggaagagaaaaggaagcgc
agagaagaagaaagacgtaaaagaaaagaagtggagaagcagaagaaaatttctgaaaaa
gaaataaggatcaagcttctcaagaagcccgaaaaaggagacgaactgtccagtgaaaag
cacaaagaaaaaggtgaagaagctgacattgaggaaaacaaatgggataaatcacctgga
tctgggagtataaaatccaaatctttggagggttcactaaaagaacctaaggaaaagtca
caaaatgatagtgacaaagagcaaagagatttggagagaagatttcgagaaaaagaacct
gaaagacaaaggtatcgattggatgatggcagaaagcatagagctcactatgagtttgac
aagtttgtgagaaggaatgaagaggagctgaaatgggggaaaggatacaaccaagacaga
ggaaagaaagggaactacaactacagcttcactgtggaggcagtagacaaactgggatcg
cccagccatgcagttataccagccaggagctcgcattcgaacacatacgggatctacaag
taa
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