Terriglobus albidus: FTW19_24215
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Entry
FTW19_24215 CDS
T06135
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
talb
Terriglobus albidus
Pathway
talb03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
talb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
FTW19_24215 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
talb03400
]
FTW19_24215 (ligD)
Enzymes [BR:
talb01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
FTW19_24215 (ligD)
DNA repair and recombination proteins [BR:
talb03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
FTW19_24215 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
FAD-oxidase_C
Motif
Other DBs
NCBI-ProteinID:
QEE30827
UniProt:
A0A5B9EK78
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All DBs
Position
6058168..6060930
Genome browser
AA seq
920 aa
AA seq
DB search
MATKKAAKKSGTRKATAKATAKRAPTASSAVDKQLAKYRSMRDFGITAEPAGGHKTAKLS
ERPFVIQKHAATRLHYDFRLGWNGVLKSWAVAKGPSYVVADKRLAVEVEDHPMEYGGFEG
IIPKGQYGGGTVMVWDHGTWVPQPGHDFDEGLKSGSLKFILHGEKLKGKWALIRMKGGRF
AGDTKPGAKPNWLLIKEHDDFERGPDDPPLTEAEPDSVVTGRSIEQIAAAEDHVWNSKET
STSDQPWYKQPSKAPEEAPRSPKPPGKAVKSAVSLGKLPKEELPEFLKPQLAVEAFTPPT
GSNWIHELKLDGYRIQAHIDHGKVKLFTRRGLDWTHRIRPVATALAKLPVTTAILDGELC
AVRPDGTTSFADLQASFEHGERRALTYFVFDLLHLDGHNPRDLPLLKRKAMVEKLLTQLD
HPQIQISQHLQGDANAIFQNACSLHAEGIVAKRGDAPHRATRSPEWLKLKCIRQQEFVVG
GFTLPSNAIHGVGALLLGYYNDLKQLIYAGRTGTGFDARTHTMLRDKLNALRQAKPAFQR
VPNEAQKGVLWVKPELVAQVTFTTWTADNLIRQAAFQGLREDKPAEEVRREEPTVAPSAK
QERGRMPMPQAAIKAPTQNSIAARVATKKKTTEDAAPVRLTHPDKVLDAASHLTKQQLAN
YYWAIAPYMLPHITNRPLSLVRCPEGSGKPCFFQKHVNHTLPPGITGTPVPDKKTGKIEQ
YITLSTPEALAGLAQMGVLEVHPWGSQNDDLERPDRVVIDLDPDTAISWSTLCDAAAEVR
DRLKKLGLTSFLKTTGGKGLHVVIPITPKHDYAAVKEWAHEFVLQMERNNPRLYLSKMSK
AARANHIFLDYLRNERGATAVAPFSPRAREGAHVSLPLPWTDLKLPERPVFTVVDFETWK
PRLKRDPWKEMGKVKQQLPI
NT seq
2763 nt
NT seq
+upstream
nt +downstream
nt
atggccacgaaaaaagcagcgaagaaatccggaacacgcaaagctaccgccaaggccacg
gcgaagcgcgcacctacggcctcctcagcggtcgacaaacagcttgcgaagtatcgctcc
atgcgcgactttggtatcaccgccgagcctgccggaggccacaaaaccgccaagctcagc
gaacgcccgttcgtcattcaaaagcacgccgcgacgcgcctgcactatgacttccggctc
ggctggaacggtgtgctgaagagctgggccgtagccaaagggccaagctacgtcgtcgcc
gacaaacggcttgccgttgaggtggaagaccatccgatggagtacggtggcttcgaaggc
atcattcccaagggacagtacggcggcggcaccgtcatggtctgggaccacggcacgtgg
gtgccgcagccggggcacgatttcgacgaagggctgaagagcggctcgctgaagttcatc
ctgcatggcgaaaagctgaaaggaaaatgggcgttgatccggatgaaaggcggacgcttt
gctggcgataccaagcctggcgccaagcccaactggctgctcatcaaagaacacgacgac
ttcgagcgcgggcccgatgatccgccgctcaccgaagcagagccggactcagtcgttacc
ggccgctccatcgagcagatcgccgccgccgaagaccacgtctggaacagcaaagagacc
agcaccagcgaccaaccctggtacaaacagccgtcgaaggcgcccgaggaggctcctcgc
agccccaaaccacccggcaaggcagtcaaaagcgcagtctcactcgggaagcttcccaag
gaggagcttcccgaatttttgaagccccagctcgccgtagaggctttcactccgccaact
ggctccaactggattcacgagctcaaactcgacggctatcgcattcaggcccatatcgac
cacggcaaggtaaagctattcacccggcgcggactcgactggacacatcgtatccggcct
gtcgccaccgctctggccaagcttccagtaacgacagccatcctcgatggagagctctgc
gccgtgcgtccagacggcaccaccagctttgccgatctgcaggcttccttcgagcatgga
gagcgccgggcactcacctacttcgtcttcgatctactgcatctcgacggtcacaacccg
cgcgatctgccgctactcaaacgcaaggccatggtcgagaagctgctgacacagcttgac
catccacagatccagatctcgcaacatttgcaaggcgacgcgaatgccatctttcagaac
gcttgcagcctgcatgcggaaggtatcgtcgccaagcgcggcgatgccccccatcgcgcg
acacgctcgccggagtggctgaagctgaagtgcattcgccagcaggagtttgtcgtcgga
ggcttcacgcttccctccaatgccatacacggcgtaggtgcactcttgctgggctattac
aacgacctgaagcagcttatctatgcaggccgcactggtacaggcttcgatgccaggact
catacgatgttgcgcgacaagctgaatgcgttgcgacaggcgaagcctgcttttcagcgg
gtccccaacgaagcgcagaagggcgtgctctgggtaaagcccgagctcgtcgctcaggtc
accttcacgacctggaccgccgacaatctcatacgacaggccgcctttcagggccttcgc
gaagacaaacctgcggaagaggtgcgccgcgaagagccaacggtcgctccctccgcgaag
caggagagagggaggatgccgatgccgcaagcagctataaaagcgccaacgcaaaattcc
atcgcagctcgagtcgcgacgaagaagaagacaaccgaagacgccgcgcctgtccgcctg
acccatcccgataaggttctcgatgcggccagccacctcaccaaacaacaactcgccaac
tactactgggcgatcgcaccgtacatgctgccccacatcaccaatcgcccgttatcgctg
gtgcgatgccctgaaggttccggcaaaccatgcttcttccagaagcatgtaaatcacacg
ttgccgccaggcatcacgggaactcccgtacccgataagaagacaggcaagatcgagcag
tacatcacgctctccacaccggaggcgctagccggactggcccagatgggagtgctcgag
gtccatccgtggggatcgcagaacgacgatctggagcggcccgatcgcgttgtcatcgat
ctcgatcctgacacagcaatctcctggagcactctctgtgacgctgccgcggaggtgcgc
gatcgtctgaagaagcttggtctaacctcctttttgaagaccacgggaggtaagggactg
catgtcgtcattcccatcacgccgaaacatgactatgcagcggtgaaagagtgggcgcat
gagttcgtgctgcagatggagcgcaacaatccgcggctctatctcagcaagatgagcaag
gccgcacgcgcgaaccatatcttcctcgactatctccgcaatgaacgaggagccacggca
gtggctccgttcagtccgcgcgctcgcgagggagcacatgtttcgctcccgcttccatgg
acggatctcaaacttcctgagcggcctgtctttacggttgtcgacttcgagacatggaag
ccgcggcttaagcgcgatccgtggaaagagatggggaaggtgaagcagcagttgccgatt
tag
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