Thermoleophilum album: JDY09_02780
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Entry
JDY09_02780 CDS
T08835
Symbol
ligD
Name
(GenBank) non-homologous end-joining DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
talu
Thermoleophilum album
Brite
KEGG Orthology (KO) [BR:
talu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
JDY09_02780 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
talu03400
]
JDY09_02780 (ligD)
Enzymes [BR:
talu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
JDY09_02780 (ligD)
DNA repair and recombination proteins [BR:
talu03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
JDY09_02780 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
Motif
Other DBs
NCBI-ProteinID:
WDT94195
LinkDB
All DBs
Position
complement(607350..608267)
Genome browser
AA seq
305 aa
AA seq
DB search
MSDPARLTVDGRELRIARPEKVLFPAAGITKLDLARYYLRVAPLMLPHLRGRPVSMERYP
DGIEQEGFVQKEVPAHFPGWIDRVTVPRKAGGETTYAVIERAATLVYLADQACITPHVWT
SRTPRLANPDRLIFDLDPPPAAPVARVRAATRTVVRALARVGLAPHVLATGKRGFHVVAA
IEPDSDFDAVRALAHDLAERLARRHPDDFTVAQRRASRGERVYIDVARNGYAQTAVPPYA
VRATPRATVAVPLRPSELGQRRTRPDRFDIGNVWRRLARLGDVWVQIEARPATLDDVRRR
LARAG
NT seq
918 nt
NT seq
+upstream
nt +downstream
nt
gtgagcgaccctgccaggctgacggtcgacggtcgcgagctgcgcatcgcgcgacccgag
aaggtgctgttccccgcagcgggcatcacgaagctggatctagcccgctactacctgcgc
gtcgcgccgctgatgctcccgcacctgcgcgggcgccccgtcagcatggagcgctacccc
gacggaatcgagcaagagggtttcgtacagaaggaggtgccggcgcactttcccggttgg
atcgaccgcgtcaccgtgccccgcaaggcaggcggcgagacgacctacgccgtcatcgag
cgcgccgcgacgctcgtgtacctagccgaccaggcgtgcatcacaccgcacgtgtggacg
tcacgcaccccccgcctcgccaatcctgaccggctgatcttcgatctcgatcccccaccc
gctgccccggtcgcccgggtacgcgccgccactcgcaccgtcgtccgcgcgcttgcgcgc
gtcgggttggcgccgcatgtgctcgcgaccggcaagcgtggctttcacgtcgtcgcggcg
atcgaacccgacagcgatttcgacgccgtgcgcgcactcgcccacgacctggccgaacgg
ttggctcgccgccaccccgacgatttcaccgtcgcgcagcggcgggcgtcgcgcggtgaa
cgcgtctacatcgacgtcgcgcgcaacgggtacgcccagacggcggtgccgccgtacgcg
gttcgagcgacgccgcgcgccaccgtcgccgttccgctgcgtccgagcgagctcggacag
cggcgcacacgtcccgaccggttcgacatcggcaacgtctggcgccggcttgcgcggttg
ggcgacgtctgggtgcagatcgaagcgcgcccggcgactctcgacgacgtgcgacggcgg
ctagctcgggccggctag
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