Theileria annulata: TA03235
Help
Entry
TA03235 CDS
T00253
Name
(RefSeq) DNA-directed RNA polymerase II largest subunit, putative
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
tan
Theileria annulata
Pathway
tan03020
RNA polymerase
tan03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
tan00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
TA03235
09124 Replication and repair
03420 Nucleotide excision repair
TA03235
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tan03021
]
TA03235
03400 DNA repair and recombination proteins [BR:
tan03400
]
TA03235
Enzymes [BR:
tan01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
TA03235
Transcription machinery [BR:
tan03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
TA03235
DNA repair and recombination proteins [BR:
tan03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
TA03235
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_1
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_6
RNA_pol_Rpb1_4
RNA_pol_Rpb1_7
Motif
Other DBs
NCBI-GeneID:
3865193
NCBI-ProteinID:
XP_954882
UniProt:
Q4UCP5
LinkDB
All DBs
Position
3:complement(375650..380686)
Genome browser
AA seq
1678 aa
AA seq
DB search
MTTVIDLNRPYSPCELKRIRAIEFGLLDPELVKRMSVCEITLTELYREGIPQTGGLNDLR
MGTTDPRHICLTCSMDLKYCPGHFGHIVLAKPMYHYGFMMTVLKILRCVCFNCSKFLLNK
EDPRVQLILKSPSSSFRLNHLSELCSASRTCRIDTQSNSKIEGCGYPQPSYTKEGPNLMI
QFSQKQRELLEEADEQCNDIKRPLTPEEAFKVLRGITLEDMKCLGFVPERSQPCWLILQV
LPVPPPAVRPYVQYGSDRSEDDLTLKLLDVLKTNNLIKRHDKRATAPHIIQEMCQLLQFH
ITTLFDNDIPGMPIASTRSKKPIKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNI
PIDTIGVPKSIAMTLTFCETVNSLNYESLRKKVETGPHDWPGAKYIIRDDGTRFDLRHVK
KSSELQLEYGYKVERHMQDGDYILFNRQPSLHKMSIMGHRAKILPYSTFRLNLSVTTPYN
ADFDGDEMNLHLVQTHETRAEVKHLMLVPKQIVSPQGNRPVMGIVQDSLLAVSKFTKRDT
FLTRDELMSLLIWIPYWDGKLPQPAIFFPKNLWTGKQVISVLLTFNQSQGITNINLIRDG
TIKLDKDNLNCSINDSRVIIRKNEHLSGIICKKTVGCSSGSLIHILWHEAGPEKCRDFLT
TLQKVVNNWFLQIGFTVSCSDIYCSESTLNKVYRILDKSKKEVQKLVLQAQKGKLKCQPG
KSLFESFEARVNKELNDAREQSGSVVASSLNLTNNILSMVNSGSKGSTINISQIIACVGQ
QNVEGKRIPFGFRDRSLPHFIKHDYGPESRGFVSNSYLSGLTPQEMFFHAMGGREGIIDT
ACKTSETGYVQRRLIKAMEDVMVQYDRTARNGNGEILQFLYGEDGMGAEYIEDQFIDLMR
LDDEEIHRRFSHDFRSESYGLGWISEDIRNAILSDFSQQVILVEEFQKLLDLKKMICEEI
FPGGDYSQHLPINIKRILEYATTQFPASSTSKLNPVEIAQRTSKLLESLIIINTSGPTDI
LSEEAQQNATILIKAHLRCHLNSRYLMEHVQISSLALDWVYGEVERCFFRAIANPGECVG
AIAAQSIGEPATQMTLNTFHFAGVSSKNVTLGLPRLKELINVVTNVRTPSLTIYLDPSIN
KDQERAKEMQTLLEYTSFEKIVLGYTVVYDPVVDRTIIKEDYEWVRDYYEFPDEEMGALG
QFVLRIVLNSKIMTDKRLTMKEVGEIIYSEFSNGEIDAIYTDDNSELLVMRIRVKYGGEG
ENSGPSDTEADFLNKFMTDVLCGIKLRGVKGITKVYMREENCVRYNSTVGSFDRVSQWVL
DTDGCNLESVLPITCVDYTKTFSNDVSEIFHVFGIEAARRALLREIRAVISFDGAYVNYR
HLSLLCDIMTQKGYLMSITRHGINRADRGPLIKCSFEETLETLLTAAVFGEVDHLKGVTE
NVIVGQLSPYGTGAFDIMIDEVKLRDANQTNAINVADTLGLVSPDSSPLSPSTPATKQTM
SPMAFSPTYTSLMMSPVGGIGMGPSTPGLMVDTYALGGSFSPTSPTSPMSPTSPMSPTSP
MSPTSAISPVYSPAYSPTSPMSPTSPTSALSPTSPVYSPAYSPTSPTSAMSPTSPVYSPA
YSPTSPNLGYAPTSPVYSPAYSPTTPNYGYSPTSPLSPTSPAYSPTDPFSPNPFEDID
NT seq
5037 nt
NT seq
+upstream
nt +downstream
nt
atgacaacggttatcgatttaaaccgaccctattcaccatgcgaactcaaacgaatcagg
gcaatagaatttggacttctggacccggaactggtaaaaagaatgtcagtatgtgaaata
acactaactgaattgtaccgtgaaggaattccacaaacaggaggccttaacgacctcagg
atgggaacaacggaccctcgtcacatatgtttgacctgttccatggatttaaagtactgc
ccaggccattttggacatatagttttagcaaaacccatgtaccactacgggtttatgatg
actgtgttaaaaatcctccgttgcgtgtgttttaactgtagcaaattcctgctaaacaag
gaagacccaagagtacagctcatattgaagtcaccttcaagttctttcagacttaatcac
ctctcagagctctgctcagcctccagaacgtgcagaatcgatacgcaaagcaactcaaag
atcgaaggttgcgggtacccccaaccgagctacacaaaggagggccctaacctgatgatc
cagttttcccagaaacaaagagaacttttggaggaagcagacgagcagtgcaatgatatt
aaacgccctttgacaccggaagaggcctttaaggttttaagaggaatcacgctggaggac
atgaagtgcctgggattcgtgccggaacgctcccaaccatgttggctgatactacaggtg
cttccagtgccgccaccagcagttcgaccatacgtacagtacggaagcgatcgcagtgag
gacgaccttacactgaaattgttagacgtcttaaagacaaataatttaattaagagacat
gataaaagggccacagcgccacatataatacaggagatgtgtcagcttctccaattccac
atcacaactctattcgataacgatatacccggaatgccaatagcctcaactaggtctaaa
aaaccaataaaatcaatcagagcacgattaaagggcaaggagggaagattgagagggaat
ttgatgggtaaaagggttgatttttcagcccgtacagttataacaggtgacccaaatatc
ccaattgacaccattggagtgccgaaaagtatcgcaatgacacttaccttttgtgaaaca
gtaaactcactaaactacgaaagcttgaggaaaaaggtggaaactggcccacacgactgg
ccaggagcaaagtatataatcagagatgacggaacgagatttgatcttcgccacgtaaag
aagagtagtgaactacagctagagtatggatataaggtggaacgtcacatgcaggacggg
gattatatactatttaatcgacaaccgtcgctccataagatgagtattatgggtcacaga
gcgaagattctgccatattcaacattcagactaaacctgagtgttaccacgccgtacaac
gcagattttgacggggatgagatgaatctgcacctggttcagacacacgaaacgagagcg
gaagtgaagcacctgatgctggtcccgaagcagatcgtttccccgcaaggaaacagacca
gttatgggaattgtacaggactcgctgctagctgtttcaaagttcacaaagagagataca
ttcttgacaagagacgagctaatgtcgctgctaatttggatcccgtactgggacggaaag
ttgccccagccagcaattttcttcccgaaaaacctctggacaggaaagcaggtgatttca
gtgcttttaacattcaaccagtcgcaaggaataacaaacataaacttgataagagatgga
acaataaagttggataaggataacctaaactgcagtattaatgactcaagagtaataata
agaaagaatgaacatttaagcggaataatctgtaaaaaaacagtaggatgtagttctggt
tcactgattcacattttatggcatgaagcggggcctgaaaaatgccgtgacttcctaaca
acactacaaaaggttgttaacaactggttcctacaaataggtttcacggtttcctgtagt
gacatttactgttcagagtctactctgaacaaagtgtacaggattttggataagagtaag
aaggaggttcagaagttggtattgcaagcacagaaagggaaattaaagtgccaaccgggt
aaatcgctgtttgaatcatttgaagctcgagtgaataaggagttaaatgacgcccgtgag
cagtctggtagtgtagtggcctcgtcactcaacctcacaaacaacatcctctcgatggta
aattcaggctcaaagggaagtacaattaacatatcacaaatcatagcatgtgtgggacag
caaaatgtagagggaaagagaataccatttggtttcagggacagaagcctccctcacttc
ataaagcacgattacggcccagagagtagagggttcgtatcgaattcttacctgagcggc
ttaaccccccaagaaatgttcttccatgcaatgggagggcgagaagggatcatagataca
gcctgcaaaacgagtgagacaggatatgtgcagagaagattgattaaggcaatggaggat
gttatggtccagtacgaccgaactgcaaggaacggaaacggtgagattttgcagtttctg
tacggagaagacggaatgggagcagagtacattgaggaccagttcatagacctgatgcga
ctggacgacgaggagattcaccgcaggtttagccatgacttcaggagtgagtcgtatggc
ctggggtggatcagcgaggacataaggaacgcaatcctgtcggacttttcacagcaggtt
attctggttgaggaattccagaagctgctggatctaaagaagatgatatgcgaggagatt
ttcccaggaggagactactcccagcacctgccaatcaacattaagcgcattttggagtac
gcaacaacacagtttccagcatcttcaaccagcaagttgaacccagtagaaatagcacaa
cgcaccagtaaactgttggaaagcctaatcataattaatacaagtggaccaactgatata
ttgtctgaggaggcccaacagaacgctacgatactgattaaggcgcacctgaggtgccat
ctgaacagcaggtatctgatggagcatgtgcaaatcagtagtttagcccttgactgggtt
tacggtgaagttgaacgttgcttcttcagggccatcgcaaaccctggagagtgtgtaggt
gcaattgcggcgcaatccattggtgaaccagcaactcaaatgacgctaaacactttccat
ttcgcaggtgtatccagtaaaaatgtgactttgggtctcccccgtctcaaggagctaatt
aacgtggtaacgaatgtgagaacgccctcgctcacgatttacctagacccctcaataaac
aaggaccaggaacgagcaaaagagatgcagacactattggagtacacgagcttcgagaag
attgtgctgggttacactgtggtgtacgaccctgtggttgacaggacgataataaaagag
gactacgaatgggttcgagactactacgagtttccagacgaggaaatgggagcactgggc
caatttgtactccgcatagtactcaacagtaagataatgactgataagaggctgacgatg
aaggaggtgggtgagatcatatactcagagttttctaacggagaaattgacgcaatatac
actgacgacaacagcgaacttttagttatgaggatcagggtaaagtacggaggtgaaggt
gaaaattcaggaccctctgacactgaagcagacttcctcaacaagttcatgactgacgta
ctctgtgggatcaagcttcgaggtgtcaagggaattacgaaagtgtacatgcgcgaggaa
aactgtgtacgttacaacagcacagtgggcagttttgatagagtgtctcagtgggtgttg
gacacagacggatgtaaccttgaaagtgtactcccaatcacctgtgtagattacactaaa
acatttagcaatgacgtgagcgagatcttccacgtctttggtatcgaggcagcgagacgt
gctcttctacgagaaatcagagcagtcatctcatttgatggcgcatacgttaactaccgt
cacctctcactcctatgtgacatcatgacccagaaggggtatcttatgagcatcacaaga
catggaattaacagagctgacagaggtcctctgataaagtgcagtttcgaggagacactt
gagacccttttaacagcagcagttttcggtgaagtagatcacctcaaaggagtcacagaa
aacgttatagtaggtcagctctcaccctacggcacaggcgcttttgacatcatgatcgac
gaagttaagctcagagacgcaaaccaaacaaacgcaatcaacgtagcagatactctcgga
ctcgtctcaccagactcatcaccactaagcccgtcaactccagccactaagcaaactatg
tcacccatggcttttagtccaacctacacctcacttatgatgtctccagtaggaggcata
ggcatgggcccaagcactcctgggcttatggtggacacttacgctcttggaggtagcttt
agtccaacaagcccaaccagtcctatgagtcctacaagcccaatgagtcctacaagtcca
atgagcccaacaagcgcaatatcaccagtatactccccggcatattctccaaccagtcca
atgagtccaactagtccaacaagtgcattaagtccaacatcgccagtatactcgcccgct
tattcaccgaccagtccaaccagcgcaatgagtcctacgtcgccagtatactcaccggct
tattcaccgactagtccaaatctgggatatgctccaacttcaccagtatactcacctgca
tactcaccgactaccccgaactatggatactctccgaccagtccactcagtcctacctca
ccggcttacagtccaacggacccattctcaccaaaccccttcgaagatatcgattaa
DBGET
integrated database retrieval system
