Candidatus Thiothrix anitrata: J8380_15790
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Entry
J8380_15790 CDS
T07878
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
tani
Candidatus Thiothrix anitrata
Pathway
tani03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
tani00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
J8380_15790 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tani03400
]
J8380_15790 (mfd)
Enzymes [BR:
tani01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
J8380_15790 (mfd)
DNA repair and recombination proteins [BR:
tani03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
J8380_15790 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
MFD_D3
CarD_TRCF_RID
Helicase_C
ResIII
UB2H
AAA_30
SWI2_SNF2
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
QTR49674
LinkDB
All DBs
Position
3165137..3168610
Genome browser
AA seq
1157 aa
AA seq
DB search
MPALLQPHFPASPNGHVRWGQLYGASLDWLIAQAAQGFDGLLLLAVPDVHTAYQMDSALH
FFAPEIPSHIFPDWETLPYDVFSPHEDIISERLKTLATLQNLKRGILIVPATTLLHRVAP
TSYVHGHTFVVRKGSPLNIDKLRKQLEEAGYRNVSQVMAHGEYATRGSLVDLFPMGSHTP
YRIDLFDEEIDSIRTFNPETQRTEDVVNSIELLPAREFPLDEAGIRTFRQNYRAQVEGDL
SRSRIYEGVSQGKPPAGIEYYLPLFFEHTATLFDYLPKKTLLVLAEGVDAAVKQFWETVE
YRYEQRRHDIERPLLAPEKLFLTAAMLGSWIGDYPRVEVRRFKEVEENPPQSPFFKGGSQ
NALNYPIAALPSLLIHARQEQPLFLLLNFIKDLKGRVLFTAESAGRREAFLTLLKDNGIV
VKTLETWQDFLGSKAEMAVTVAPLENGFWLPDAKIAVIPENLLHGVQIQQQRRRRKATRD
ADAIIRNLTDLNEGAPVVHEEHGVGRYLGLETVTAGGVTAEYLLIEYANHDKLYVPVAAL
HLVSRYTGADPEHAPLHRLGNEQWDKARQKAAEKARDVAAELLDIHARRAAQQGHSFPFD
DNDYRLFAGAFPFEETPDQALAIENVIKDMRAPQPMDRVVCGDVGFGKTEVAMRAAFVAA
NAGKQVAMIAPTTLLTQQHLNNFRDRFADWPFNIESLSRFKTGKETNTALAALASGKIDI
VIGTHKLLQDDVHFKQLGLVIIDEEHRFGVRDKEQMKKLRANVDMLTMTATPIPRTLNMS
LSGLRDLSIIATPPTQRHAIKTFVCEWNKTIIQEACARELSRGGQVYVLHNEVKTIANVE
AELSAMLPGVTVRHAHGQMRANELESIMSDFYHQRFQILIATTIIESGIDVPTANTILIN
RADKLGLAQLHQLRGRVGRSHHRAYAYLIAPPKSALTPDAVKRLEAIESLEELGVGFTLA
THDLEIRGAGELLGEGQSGQIQEIGFNLYNDLLERAVKALKSGKVPELSATSRRTTVELG
APALIPDAYLPDVHARLILYKRIASAESQAALDELRVEMIDRFGLLPEPTKTLFSVTRVK
LLAQELGIRKLDMHVKGGRIIFDDKPNIDPMKVITLIQKRPWVFKLDGQDKLRFEIELPT
VEEREEWVVKLMGEIGG
NT seq
3474 nt
NT seq
+upstream
nt +downstream
nt
atgcctgcattgctccagccccacttccccgcatcccccaacggtcacgtccgctggggg
cagttgtacggcgcatccctcgactggctgattgcccaagccgcgcaaggctttgatggc
ttgctgctgctggcagtgccggatgtgcataccgcctaccagatggattcggcattgcac
ttctttgcgccggaaatcccgagccacattttcccggattgggaaaccctgccctacgac
gtgttttccccgcacgaagacattatttccgaacgcctgaaaacgctggcgacgctgcaa
aacctgaagcgcggcatcctgattgtgccagccaccacactgctgcaccgggttgcaccc
accagttatgtacacgggcatacctttgtagtgcgcaaaggttcgccactcaatatcgac
aaattgcgcaagcaactcgaagaagcaggctaccgcaatgtcagtcaggtgatggcgcat
ggcgaatacgcgactcgtggttcactggtcgatttattcccgatgggcagccatacgccc
taccgcattgatttgttcgacgaggaaatcgactcgatccgcacctttaacccggaaacg
cagcgtactgaagatgtggtaaacagtattgaactgctgcctgcgcgggaatttccgctg
gatgaagccggaattcgtaccttccgccagaattaccgggcgcaagtcgaaggcgatttg
agccgtagccgcatttacgaaggggtgagtcagggcaagccgccagcggggattgagtat
tacttgccgctgttctttgaacataccgcgacgctgtttgattatttgccgaagaaaacg
ctgttggtactcgctgagggtgtggatgcggcagttaagcagttttgggagacggtggaa
tatcggtatgagcaacggcggcatgatattgaacgtccattgcttgcgccggagaaattg
tttctgacagcggcgatgttggggagttggattggggattatcctcgggttgaggtgcgg
cggtttaaagaggtggaagaaaatccccctcagtccccctttttcaaagggggaagccaa
aacgcgctgaactaccccattgccgccctgccctcgctgctgatccacgcccgtcaggaa
caaccgctgttcctgctgctcaatttcatcaaagacctgaaaggccgggtgctattcacc
gccgaatccgctgggcggcgcgaagccttcctcacgctgctgaaagacaacggtatcgtg
gtcaaaacgctggaaacctggcaggatttcctcggtagcaaagccgaaatggcagttaca
gtcgcgccgctggaaaacggtttctggctacccgatgcgaagattgctgtcatccccgaa
aacctgctgcacggggtgcaaatccagcagcaacgccgtcgccgcaaagccacccgcgat
gccgatgcgattattcgtaacctgaccgacctcaacgaaggcgcacctgtcgttcatgag
gaacacggggttgggcgttatctggggctggaaacagtcacggcaggcggagtgacggcg
gaatatttgctgatcgaatacgccaaccacgacaaattgtacgtgcccgttgccgcgctg
catctggtcagccgttacaccggggctgacccggaacacgcgccgctgcaccgcctcggc
aatgagcagtgggacaaagcacgccaaaaagcagcggaaaaggcgcgggatgtggcggcg
gaattgctcgacatccacgcccgccgcgccgcgcagcaggggcatagcttcccgtttgac
gacaacgattaccgcctgtttgcgggcgcgttcccgtttgaagaaacgccggatcaggcg
ctggcgattgaaaacgtcatcaaggacatgcgtgcgccacagccgatggatcgggtggtg
tgcggcgacgtgggtttcggcaagaccgaagtagcgatgcgggcggcattcgtggcggcg
aatgcaggcaagcaggtggcaatgattgcgccgacgaccttgctgacgcagcagcatttg
aacaatttccgcgaccgttttgccgactggccattcaatatcgaatcgttgtcgcgcttc
aagacgggcaaggaaaccaatacggcactggcggcgctcgcgtccggcaagatcgacatc
gtgatcggcacgcacaagctgttgcaggacgatgtgcatttcaagcaactggggctggtg
attatcgacgaggaacaccgcttcggggtgcgcgacaaggagcagatgaaaaagctgcgt
gccaatgtcgatatgctgaccatgactgccacgccgattccgcgcaccctgaatatgtcg
ctgtcgggcttgcgcgatttgtcgatcattgccaccccgccgacgcaacgccacgcgatc
aagactttcgtgtgcgagtggaacaagaccatcattcaggaagcgtgtgcgcgcgaattg
tcacgcggcgggcaggtgtacgtgctgcacaatgaggtcaaaaccattgccaatgtggag
gcggaactgagcgcgatgttacccggtgtgacggtgcgccatgctcacgggcagatgcgg
gcgaatgagttggaaagcatcatgagcgacttttaccaccagcgtttccagattctgatt
gccaccaccatcattgaaagcggcatcgacgtgccgaccgccaacacgattctgatcaac
cgtgccgacaagctggggctggcgcagttgcaccagttgcgcgggcgggtcgggcgttcg
caccaccgcgcttacgcttatttgattgcgccgccgaaatccgcgctcacgccggatgcg
gtcaagcggctggaagcgattgaatcgctggaagaactgggggtcggtttcacgctggcg
acgcacgatctggagattcgcggcgcgggcgagttgctcggcgaagggcaaagcgggcag
attcaggaaatcggtttcaacctctacaacgacttgctggaacgcgcggtgaaggcgttg
aagtcgggcaaagtgccggaattgagcgccaccagccgccgcaccacggtggaactgggt
gcgcctgcgctgatcccggacgcttatttgccggatgtccatgcgcggctgattctctac
aaacgcattgccagcgcggaatcgcaggcagcactggatgaattgcgggtggaaatgatc
gaccgcttcgggctgctgccagagccaaccaagacgctgttcagcgtcacgcgtgtcaag
ttgctggcgcaggaactgggcatccgcaagctggatatgcacgtcaagggcgggcggatt
atctttgacgacaaaccaaatattgacccgatgaaggtgattaccctgatccagaaacgc
ccgtgggtgtttaagctggatgggcaggataaattgcggtttgagattgaactcccgact
gtggaggagcgggaggagtgggtggttaagttgatgggggagattggggggtga
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