Thiomicrospira aerophila: THIAE_03485
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Entry
THIAE_03485 CDS
T03589
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
tao
Thiomicrospira aerophila
Pathway
tao03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
tao00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
THIAE_03485
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tao03400
]
THIAE_03485
Enzymes [BR:
tao01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
THIAE_03485
DNA repair and recombination proteins [BR:
tao03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
THIAE_03485
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
MFD_D3
UB2H
ERCC3_RAD25_C
AAA_22
SecA_DEAD
Motif
Other DBs
NCBI-ProteinID:
AHF00972
UniProt:
W0DR88
LinkDB
All DBs
Position
complement(733368..736850)
Genome browser
AA seq
1160 aa
AA seq
DB search
MSANVSKHSLFPFSLPKLTGHRSDWGYLNLTEQAWCISQLLAQHHGLIVCLCQDSAQAQT
LTEQLTIFCSPDQAIIHLPEWETLPYDRFSPHQDIIANRLSSLYQLPQLQQGCLVIPINS
LVQRLAPTDYVQRQSLQLAVGDTLDIGAFLSHLEQAGYQRVNQVMEPGELAVRGALIDLF
PIGSQAPIRLDLFDNELETIRLFDPDTQISQSQIEQINLLPAKEYDFSEEGIRQFRLQAR
EIFGGDVRTSQLYKTVSDHQNPGGLEYYLPMFFEQTATLFDYLPNNSLFIEHAELEAALE
HNWHDYLERYEIGRHDNQRPLLPPQSLLMENQACFAALKHYHRIRLHTNEQSRPVTQLNV
QFDNLPLPNLQINHQVKQPLAPLQDWLSTLAKPVIICAESLGRREALFNLLRQHALDVEI
IDQALPGHLSLVDLQPSHGLNLAVAPVINSSHSRPVCLIAESALLGQRVEQKRRRKKGHQ
DFDQAIANLIELEINSPIVHYDHGVGRYQGLQTLEIQGENREFMVLEYANQDKLYVPVTS
LHLVSRYTGTSAEHAPLHKLGTDKWDKAKRKAAEKARDVAAELLEIYAKRAAQQGMAFEL
SEQAYQQFCAAFPFEETDDQLETIAQVLADMQAPKPMDRLVCGDVGFGKTEVAMRAAFVA
AYAGKQVAILVPTTLLAQQHFESFRDRFAEWPVNIAVLSRFQTAKEQTLTLEKLAEGGID
IIIGTHKLIQKDVKFNRLGLLIIDEEHRFGVRQKEQLKKWRTQVDILTMTATPIPRTLSM
AMNALRDLSIIATPPAKRLSVQTFVQAWQPQTVREACLRELRRGGQIYFLFNEVDKIDRM
ADDLATLIPEAKVAVAHGQMNERQLEQVMQDFYHRRSQILVCTTIIETGIDVPNANTILI
YRADKFGLAQLHQLRGRVGRSHHKAYAYMLTGEPNSLTDDARKRLDAIAKHDTLGAGFML
ASHDLEIRGAGELLGEGQSGQIQEVGFGLYNELLERTVKALKSGKQPALSLELDAHCEVE
LGSAALIPEDYLADIHTRLVFYKRIASAETDAELHELEVEMIDRFGLLPDKVKNLFSATK
IKLLAQPMGIIKIDASAQMIRIQFNAQPTIAADRLIQLIQTHPQRYQLKGLAELKIFDKM
EDVNDRVKQLAFTLSHLQPH
NT seq
3483 nt
NT seq
+upstream
nt +downstream
nt
atgtcagccaacgtgtctaaacactcattgtttccatttagcctacctaaactcaccggc
caccgctctgactggggctatttaaatctaaccgagcaggcctggtgcatcagtcaattg
ttggcacaacatcatggattaattgtctgcctgtgccaagatagtgcgcaagctcaaacc
ctcacggaacagctgactattttttgttcacccgatcaggccattattcatttacccgag
tgggaaaccctgccctatgatcgtttctcgccccatcaagatataattgcaaaccggtta
agtagtctttaccagctcccgcaactccagcaaggctgcctagttattccgattaatagc
ttggttcaacggctagcgccaacagactatgtgcaacgccaaagtctacaacttgctgtg
ggtgacacacttgatattggcgcgtttttaagtcaccttgagcaagctggctaccaacgg
gtcaaccaagtaatggagcctggcgaactcgcagttcgcggcgcgctcattgatcttttc
cctattggcagccaagccccgattcgcctagatttatttgataacgaacttgaaacgatt
cgtttatttgacccagacacccaaattagccaaagccagattgagcagattaatctgctc
cccgctaaggaatacgacttctctgaagagggtattcgccaattccgtttacaagcacgc
gagatttttggcggcgatgtgcgtacgtcacaactctataaaaccgtcagtgaccatcaa
aatcccggcgggcttgaatattatttaccgatgttttttgaacaaacggctaccctgttc
gattatttacccaacaacagcctgtttattgaacatgcggagctagaagccgctttagaa
cacaactggcacgactatcttgagcgctatgaaatcggtcgccacgacaaccaacgtccg
ctgttaccgccgcagagtttgctaatggaaaaccaagcctgctttgcggcgcttaagcac
tatcaccgcattcgtctacataccaatgaacaatcacgtccggtgacacaattaaatgtg
cagtttgataacttaccgctgcctaatttacaaattaatcatcaagttaaacaaccgctt
gcgccgctgcaggactggttaagtaccctcgccaaaccggtaattatttgtgccgaatcc
ttagggcgtcgtgaagccctatttaatctattacgccaacatgcgctcgacgttgaaatt
attgatcaggcactaccaggtcatctaagcctggtcgatttgcagccttctcatggttta
aatctggcggttgcgcccgttattaacagcagtcatagcaggcctgtttgtttgattgcg
gaatccgcattattaggtcagcgcgttgaacaaaaacgtcggcgcaaaaaaggccatcag
gattttgatcaggccatcgccaatttaattgaactcgaaatcaacagcccgattgtgcac
tatgatcatggtgtagggcgttatcaaggcttacaaacccttgagattcaaggcgaaaat
cgtgagtttatggtgctcgaatatgctaaccaagacaagctttacgtaccggttacctcg
ctccacctagtcagtcgctataccggtacgtctgccgagcatgcacctttacataaacta
ggtaccgacaaatgggataaagcaaaacgtaaagcagctgaaaaagcccgtgatgtggct
gccgaactattagaaatttatgccaaacgcgccgcgcaacaaggcatggcatttgagctc
agtgaacaagcttatcaacaattctgtgccgcctttccatttgaagaaactgacgatcaa
ctcgaaaccattgcccaagttttagctgatatgcaggccccgaaacccatggatcgttta
gtttgcggtgatgtcggctttggtaaaaccgaagtggccatgcgtgccgcctttgtggcc
gcttacgccggcaaacaagtcgcgattttggtgccgaccaccctgctggctcaacaacac
tttgaaagctttcgtgatcgctttgccgaatggccggttaatattgccgtgttatcccgt
tttcagaccgccaaagaacaaacactcaccctagaaaagctagccgagggtggcatcgac
atcattataggcacccataaactgattcaaaaggatgtcaaatttaaccggcttggccta
ttaattattgatgaagaacaccgctttggtgtgcggcaaaaagaacaactaaaaaaatgg
cgcacccaggtagatatcctaaccatgaccgccacccctattccacgcaccctcagtatg
gcaatgaatgcgttacgcgacctatcgattattgccaccccaccggctaaacgtttgtct
gtgcaaacctttgtccaggcctggcaaccccaaacagtccgtgaagcctgtttgcgtgaa
ctacgccgcggcggccaaatctactttttatttaatgaggtcgataagattgaccggatg
gccgacgatctcgcgacactgattcctgaagccaaagtcgcggtcgctcatggccaaatg
aatgagcgccaactcgaacaagttatgcaggatttttatcatcgccgcagccaaatcctg
gtgtgtacgaccattattgaaaccgggattgatgtccccaacgccaatacgatcttgatt
tatcgtgcagataaatttggtttggcgcaactgcaccagttacgtggtcgggtgggccgg
tcacatcataaagcctatgcctatatgcttaccggcgaacctaacagtctgaccgatgat
gcgcgcaaacgcctggatgccattgccaagcatgacactcttggcgccggctttatgctc
gccagtcacgatttagaaattcgtggtgcgggtgaactacttggtgaaggtcaatcaggg
cagattcaagaagtggggtttggcttgtataatgaattgttagagcgaactgttaaagcg
ctcaaatcaggcaagcaaccggcgttaagcctagagctcgatgctcattgcgaagtcgaa
ttgggtagtgcggcattgattcctgaggattacctagctgatattcatacacggttggtc
ttctataaacgcattgccagcgctgaaaccgatgccgagttacacgagcttgaagtcgag
atgatagaccgttttggcctattgcccgataaagttaaaaacctatttagtgccaccaaa
attaaattactcgcgcaaccgatgggcatcattaaaattgacgccagtgcacaaatgata
cgcatccaatttaatgcgcaaccgaccattgccgccgaccgacttattcagcttattcaa
acccacccacagcgctatcaattgaaaggtctggcagaattaaagatttttgataagatg
gaggatgttaatgaccgagtaaaacagctggcatttaccctcagtcatttacaacctcat
taa
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