Terribacillus goriensis: GZ22_15030
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Entry
GZ22_15030 CDS
T03216
Name
(GenBank) hypothetical protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
tap
Terribacillus goriensis
Pathway
tap03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
tap00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
GZ22_15030
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tap03400
]
GZ22_15030
Enzymes [BR:
tap01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
GZ22_15030
DNA repair and recombination proteins [BR:
tap03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
GZ22_15030
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
AIF67821
UniProt:
A0A075LNW8
LinkDB
All DBs
Position
complement(2901370..2903154)
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AA seq
594 aa
AA seq
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MQVMKPIYRDVCPVGDGWIYEVKYDGFRAVLTVTNDSVTLTSKNGVDLSAQFPEIIMYAE
QQKQLAHKHIPFSIDGELIVPKNAKSGDFGLLQSRGRLKAAERIKQIASKRPAVLMAFDL
LVDGGKSQEKRRLSSRKQALQELVNLFVDQAGAIQFVDYSLDPTALMDSVVLHQGEGIIA
KRSASTYKTGKQHHDWYKIKNWRTITAVLTAYDKENDYFHAEMADSTGHFVPIGKCKHGM
EETERSTLTAFFKENGKVENNLLLLPPAVCAKINCLGQGDDELREPRFHSLAPSVIAADC
TEQQAVIDLAQFPQTVELSKLDKFYWEEAHIDKLRYLLYIRTVAPFMLPYMENRETTIIR
CPDGIEADFFYQKHRPDYAPDFIPDTKSLQCSDLQTLIWFANHGSIEFHAPFHHIGNDFP
REIAIDLDPPTDDALPLAIKAANLLKEWLDQMQLSTFIKTSGSKGLQLYIPLPDNQLSYE
QAGTFTEALARLLVQQHPDLFTIERMKKNRQERLYIDYVQFGMGKTLPVPYTARKRSSGT
VSTPLFWEEVRQGLTLEDFTIFTVPERLRQKGCPFASYEEVRNSQRLDSIIQLV
NT seq
1785 nt
NT seq
+upstream
nt +downstream
nt
atgcaggtaatgaaaccgatttatcgggatgtctgtcctgtcggggatggatggatatac
gaagtgaagtatgatgggtttagagctgttttaacggttacaaatgacagtgtgacgctg
acaagcaagaatggagttgatttatcagcccaatttccggaaatcatcatgtatgctgaa
cagcagaagcaattagcgcataagcacattcctttctcgattgatggtgaactaattgtg
ccgaagaatgcaaaaagcggagatttcggcttgctccaatcacgcggcagattgaaagca
gctgaacgaatcaagcaaattgcttctaaacgtcctgctgtgctgatggcttttgatctt
ctggttgacggtgggaaaagtcaggaaaagcgacggttatcctcccgtaaacaagcattg
caggagctagtcaacctatttgttgatcaagcaggagctatacaattcgtggattattcc
ttagatccaacagctctgatggattctgttgttttacatcaaggagaaggtattatagcc
aaacgctcagccagtacatataagaccggtaaacagcaccatgattggtacaagatcaaa
aattggcgtacaatcaccgctgtcctgacagcttatgataaggaaaatgattattttcat
gcagagatggcagatagtacaggtcatttcgtaccgataggtaaatgcaagcatgggatg
gaagaaacagaacgaagcactcttactgctttctttaaagaaaatggaaaggtagaaaat
aaccttcttcttctccctccagcagtttgtgccaaaataaattgtcttgggcagggggac
gatgaattacgggaaccaagattccatagtttagccccatcagtaatagcagcagattgt
acagaacaacaagcagtcatagatcttgctcagtttccgcaaacagtcgaactgagcaaa
ctggacaagttttattgggaggaagcacatattgataagctgcgttatctgctttatatt
cggacggttgcgccattcatgctgccttatatggaaaatcgggagacgacaattatccgc
tgtccggatggaattgaagctgactttttctatcaaaagcacagacccgattatgcacca
gattttatacctgatacgaaatcattgcagtgctcagatttgcagactttgatttggttt
gcaaaccatggaagtatcgaatttcatgcaccatttcaccatatcggaaatgattttccg
cgggaaatcgcgattgatcttgatccgccaacagatgatgcacttccactggctatcaag
gccgccaatttacttaaagaatggctggatcaaatgcagctctctacgtttattaagact
tccggcagcaaagggttgcagctgtacatcccgttaccggacaaccagctatcctacgaa
caagcaggcaccttcacggaagcattggcaagattactcgttcagcagcatccagatctt
tttacaatcgaaagaatgaaaaagaatcggcaagagcgtttgtatatagattatgtccag
ttcgggatgggaaaaacattgccagttccatacacggctcgaaaacgcagcagcggtacc
gttagtactcctttgttttgggaagaagtgagacaaggcctaacgctagaagacttcacc
attttcactgtaccggagcgtttacgccaaaaaggctgccccttcgcttcctatgaggaa
gtcaggaacagccaaaggctggattctattatccaattggtatga
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