Thermosulfuriphilus ammonigenes: G4V39_02560
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Entry
G4V39_02560 CDS
T06469
Name
(GenBank) hypothetical protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
tav
Thermosulfuriphilus ammonigenes
Pathway
tav03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
tav00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
G4V39_02560
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tav03400
]
G4V39_02560
Enzymes [BR:
tav01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
G4V39_02560
DNA repair and recombination proteins [BR:
tav03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
G4V39_02560
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_C
mRNA_cap_enzyme
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
QIJ71228
UniProt:
A0A6G7PUV7
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All DBs
Position
541314..542243
Genome browser
AA seq
309 aa
AA seq
DB search
MSEKLPETIRPMLAYLSAPFDSPDHLYEVKWDGTRCLLFLERGRLRLQNRRLRDITYRYP
EFSHLSEVIPQDGVVLDGEIVVLKEGRPHFTSLQEREHTRSKEKIRLLSRSLPATYIVFD
LLYLGYKPLLNLPLIRRREYLRKLLPQDPYLVESEYVLNRGLDFFAAVCQRGLEGVMAKD
IRSPYLPGQRSHYWLKFKPRGRRRCLIVGYIPGPKGGLRSLLVAEETEEGLRFRGRVGTG
LKQEEERLLLQRLQKLPPGRPFPTVKIKDAHWVSPELSCLVSYQEITNKGRFRAPVFEGL
VDETGLQTR
NT seq
930 nt
NT seq
+upstream
nt +downstream
nt
gtgtccgaaaaacttcctgaaaccatccggcccatgttggcctatctaagtgcccccttt
gactcccctgaccatctctatgaagtcaaatgggatggcaccaggtgtcttctctttttg
gaaagaggccggttaaggcttcagaaccgccggctgcgagatatcacttaccgctacccc
gaatttagccatctctccgaagtcattccccaggatggagtagttcttgatggagaaatt
gtggtcttaaaagaggggcggccgcactttaccagccttcaggagcgagaacatacccga
tctaaagaaaaaatccgtcttctttcccggagccttccggcgacgtatatagtctttgat
cttctctaccttggttataaacccctccttaaccttccccttattcggcgtcgagaatat
cttcggaaacttctaccccaggatccctatctggtggaatccgaatatgttctcaaccgg
gggctcgacttctttgccgccgtctgtcagagaggtttagagggggtgatggccaaagac
atccgaagcccttatctccccggccagagaagccattactggcttaaattcaaaccccgg
ggccggagacgatgccttattgtgggttatatacccggccccaaaggcggcctccgctct
ctcctggtggcagaggagaccgaagagggactgcgcttccggggacgcgtgggaacgggc
ctcaagcaggaagaagaaagattgctcctccagcgtctccagaaattgcccccggggcgt
ccttttccgaccgtaaaaattaaagatgcccactgggtaagcccggagcttagctgcctg
gtatcttatcaggagataaccaacaagggacgcttcagggcccctgtctttgaggggttg
gtagatgaaacaggccttcagactcgatga
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