Tabrizicola piscis: EI545_04250
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Entry
EI545_04250 CDS
T05742
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
taw
Tabrizicola piscis
Pathway
taw03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
taw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
EI545_04250 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
taw03400
]
EI545_04250 (ligD)
Enzymes [BR:
taw01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
EI545_04250 (ligD)
DNA repair and recombination proteins [BR:
taw03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
EI545_04250 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
AZL58118
UniProt:
A0A3S8U3H9
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All DBs
Position
879187..881640
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AA seq
817 aa
AA seq
DB search
MRDFKATPEPKGRKHKSTGALVFVVQKHAARRLHYDLRLEMDCVLKSWAVTRGPSLVPGE
KRLSVHVEDHPMDYGDFEGTIPEGQYGAGTVIVWDRGTWTPVIDPHKGYAKGHLEFELKG
EKLTGRWHLIRMRGKPKDKRENWLLIKGEDASARDPSAPDILEQSPQSVTSGRTIEAVAG
KPARKTPARKTRTRKTTEQGTDKPMPGFLPPMLASLVKATPGDDRWLHEIKFDGYRIQAH
VEDGKARLFTRSGRDWTDRFGAALADALTALPVSQAVLDGEVVVETGGRSSNFSALQADL
AEGRTDRMTFYAFDLLHLDGRDLTPLPLVERKRLLATILRSAKDPIRLSEHLSDQGAIVL
RHACRMGLEGIISKLRDSPYRSGRSNAWVKSKCSARQEFVIGGFVPSTASPRAIGSLVMG
VYDGDRLRSVGRVGTGFSVAVAEDLYTRLTALETPQSPFDPPLTGQAKRGVRHVRPDLVA
EVDFRAWTDDGNLRHAAFRGLREDKDPQDVTGEGLSTPPSAPEDTTPPPALPVRRIKLTN
PDRVYWPDAGITKADLADYYADVWTWIAPHVSGRPLALLRCPNGISGQKFFQKHDWKGMN
AAILRVADPTDPKDAPSIAIADFDGLTALAQAASLEIHPWGSTLADWERPDRIVIDLDPG
DGVGWDDLTFAAQEVRQRLKDAELAAFVKTSGGKGLHVVAPLVAKAEWPAVKSFCRQFAR
SMAGDDPARYVATITKSKRQGKILIDYLRNQRGATAVAAYSTRARPGGLVSAPVSWDELD
SGLSPADFTIRTMPARLAALRRDPWSDFAASARPLPG
NT seq
2454 nt
NT seq
+upstream
nt +downstream
nt
atgcgcgacttcaaggcaaccccggaacccaaggggcgcaagcacaaatccaccggagct
ttggtgtttgtcgtccagaaacacgccgcccgccggctgcattacgatttgcggctggaa
atggattgcgttctgaaaagttgggccgtcacccgcggccccagccttgttccgggtgaa
aagcgactgtccgtgcatgtcgaggatcacccgatggactacggtgacttcgaaggcacg
atcccggaaggccagtacggcgcaggcacggtgattgtctgggaccgtggcacctggacc
ccggttatcgatccgcacaagggctatgccaaggggcatctggagttcgagctcaagggc
gaaaagctgaccggtcgctggcatttgatccgcatgcgcggcaagcccaaggacaagcgc
gaaaactggctgttgatcaagggcgaggatgccagcgcccgcgacccgtccgccccggat
attctggaacaaagcccgcagtcggtgacgtctggtcgcacgatcgaggccgttgccggc
aaacccgcccgcaagaccccggcgcgaaagacccgcacccgaaagaccacggagcaaggc
acggacaaaccgatgccgggctttctgccgccaatgctcgcctcacttgtcaaggccacg
ccgggcgacgaccgctggctgcatgagatcaagttcgacggctaccggattcaggcccat
gtggaggacggcaaggcccgtcttttcacccggtcggggcgggactggactgaccgcttc
ggtgcggcccttgccgatgcgctgactgcgctgccggtcagtcaggctgtactggacggc
gaagtggtggtggaaacaggcggtcgttcgtccaacttttctgcgctgcaggctgatctg
gctgaaggccgcaccgaccggatgaccttttatgccttcgatctgctccaccttgatggg
cgcgatctgacgccgctgccgctggtcgaacgcaagcgcctgctggcgactatcctgcgg
tccgcgaaggatccgatccggcttagcgagcacctgtcggaccagggtgccatcgtcctc
cgccacgcctgccgcatggggcttgaggggatcatttcgaaactgcgcgacagtccctat
cggtcagggcgcagcaatgcctgggtcaagtcgaaatgctcggcccggcaagaattcgtg
atcggcggcttcgtgccttccaccgcctcgccccgtgcgatcgggtcgctggtgatgggt
gtctatgatggcgaccggttgcgcagcgtggggcgtgtcggcaccggcttttccgttgcc
gtggccgaggacctttacacccggctgaccgcgctggaaacgccgcagtcgccctttgat
ccgccgctcacgggtcaggcaaagcgcggggtgcgccatgtcaggcccgatcttgtcgcc
gaagtcgatttccgcgcctggacggatgacggcaacctgcgccacgccgccttccgcggc
ctgcgcgaggataaggacccgcaggacgtcacgggcgagggcctctcgacgcccccgtct
gcgccagaggacacgacaccgccccctgccctgccagtgcggcggatcaagctgaccaac
cccgaccgggtctattggccagacgcaggcatcaccaaggccgaccttgccgactactat
gccgacgtctggacctggatcgccccgcatgtcagtggccggcccttggcccttctgcgt
tgcccgaacgggatcagcggccagaaattctttcaaaaacacgactggaagggcatgaat
gctgccatcctgcgcgtggcggacccgacagatccgaaggacgcgccgtcaattgccatc
gccgactttgacggcctgaccgcccttgcccaagcggccagtctggagattcacccttgg
ggcagcacccttgcggattgggaacggcctgaccgcattgtcattgaccttgatcccggt
gacggtgtcggctgggatgacctgacctttgctgcgcaagaggttcggcaacgccttaaa
gacgcggagcttgcggcctttgtcaaaacctcgggcggcaaagggttgcatgtcgtggcc
cctttggtcgcaaaggccgaatggcctgcggtcaagtccttctgccgccagtttgcacgc
agcatggcaggggacgatcccgcacgttatgtggcgacgatcaccaaatccaagcggcag
ggaaagatcctgatcgactatctgcgcaaccagcgcggggcgactgcggtggccgcctac
tctacccgcgcacggccggggggtctggtgtcggcccccgtcagctgggacgaactggac
agcgggctgtcccccgccgacttcaccatccgcacgatgcccgcccgactggccgccttg
cgccgcgatccgtggagcgactttgccgcgtctgcccgaccactgccgggttaa
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