Thermus brockianus: A0O31_02242
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Entry
A0O31_02242 CDS
T04600
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
tbc
Thermus brockianus
Pathway
tbc03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
tbc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
A0O31_02242
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tbc03400
]
A0O31_02242
Enzymes [BR:
tbc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
A0O31_02242
DNA repair and recombination proteins [BR:
tbc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
A0O31_02242
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
CarD_TRCF_RID
Helicase_C
TRCF
ResIII
UvrB_inter
AAA_16
Motif
Other DBs
NCBI-ProteinID:
APD10276
UniProt:
A0A1J0LW62
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All DBs
Position
2015664..2018627
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AA seq
987 aa
AA seq
DB search
MTGGPLGQPMDTLLRTFYGHRLNLPQVGAAWLFAREAPPAVLLVPEERVRRYQDLSAFGV
PVYVNPGLEALEEKALFVFSYGEALAPFPEDPEAWRLVLEVGRHYPREALLSRLLQMGYA
RDEDYRVLGEVLELGEVRLEFFGDELERLLVAGTERRRHVLLPKPGKAEGFQSHKIRHFP
GPVYLDTPALAPKALWPLLEGRPLVALGSGVEFPPLELGVRPLPPYRGSLKALEKDLARW
LGEGKRVHLFVGHARTLEYLRRRLAAFEPQVVERFPGPKGRLSLLPGAFEGGAEWGEHVL
LTEALVFATGGVRARLRRGEGLTDPGALTPGDYLIHPEHGIGQFLGLETREVLGARRDYL
VLRYKGEGRLYLPVEQLPLLRRHPGTTDDPPELSSLGKNEWQRAKERARKDVEELAARLL
VLQAKRKATPGRAFPPLPDWDPLIGKGFPYELTPDQKRALEEVLRDLESPHPMDRLVSGD
VGFGKTEVALRAAHRVVGHGAQVAFLVPTTLLAEQHGKTFRKRYQGLPVRVAVLSRFTPE
KEEAEILKGLAEGGVDIVIGTHRLLQPDVRFRDLGLLIVDEEHRFGVAQKERIRELKAEV
DTLYLSATPIPRTLYSALVGLKDLSSIQTPPPGRKPIRTFLAPFDPLLVREAILQELERG
GKVFYVHDRVASIEARRRYLENLVPEARIGVVHGQMPEGLVEETMLLFAEGAYDVLLATT
IIESGLDVPEANTILIERADRLGLATLYQLRGRVGRRDQEAYAYLFHPPRLTEAAEKRLN
AIADLSDLGSGHLLAERDMEIRGVGNLLGPEQHGHIRALSLEVYTDLLEEAIRKLKGEAK
EERPHVTLDLALSARLPAEYVGSLEARSRYYGRFAEARSLAELSRLVRELKERYGPLPEE
AENFVNLARLRLVAERKGVVSLTEDLTHLQAVFGYWPLDYDARGLKGLPFRLEITQYPPG
FRLEKKGLRPRDYPEALMETLFLFADR
NT seq
2964 nt
NT seq
+upstream
nt +downstream
nt
atgacgggtggccctttgggccagcccatggataccctcctgcgcaccttctatggccac
cgcctaaacctgccccaggtgggggcagcttggctttttgcccgggaagcgccccctgcg
gtgctcctggttccggaagaacgcgtaaggcgttaccaggacctctccgcctttggggta
cccgtctacgtgaacccgggcctcgaggccctagaggagaaggccctcttcgtcttctcc
tacggggaagccctggctcccttccccgaggaccccgaggcctggcgcctggtcctggag
gtggggcggcattacccgcgggaagccctcctttcccgcctcctccagatgggctacgcc
cgggacgaggactaccgggtcctgggggaggttttggagctcggggaggtgcggctggag
ttctttggggacgagctggaaaggctcttggtagcggggacggaaaggcgccgccacgtc
ctcctgcccaagccgggaaaggcggaaggtttccaaagccataagatccgccacttcccg
ggacccgtttacctggacacccccgccctggcccccaaggccctctggcccctcctggag
gggcggcccctggtggccctggggagcggggtggagtttcctcccttggagctcggggtg
cgccccctccctccctaccgggggagcctgaaggctttggagaaggacctggcccgctgg
cttggggagggcaagcgggtccacctcttcgtgggccatgcccgcaccctggagtacttg
cggaggcgccttgcggcctttgagccccaggtggtggagcggtttccggggcccaagggc
cgcctctccctcctcccaggggcctttgaagggggggcggagtggggggagcatgtcctc
ctcaccgaggccttggtcttcgccaccgggggtgtgcgggcaaggctgcgccggggggag
gggcttaccgacccgggggcccttaccccaggggactacctcatccaccccgagcacggc
atcggccagtttttgggcttggaaacgcgggaggttctgggggccaggcgggactatctg
gtcctccgctacaagggagaagggcggctttaccttcccgtggaacagctacccctcctc
aggcggcatccgggtaccacggatgaccccccggagctctcctccctgggcaagaacgag
tggcaacgggccaaggaaagggcaaggaaggacgtggaggagcttgcggcccgcctcctt
gtcctacaggccaagcgcaaggccaccccgggccgggcctttccccccctgccggactgg
gaccccctcattgggaagggttttccctacgagctcacccctgaccagaagcgggccctg
gaggaggttctaagggacctggaaagcccccaccccatggaccgcctggtttcgggggac
gtgggcttcggcaagacggaggtggccctaagggccgcccaccgggtggtggggcacggg
gcccaggtggccttcctggtccccaccaccctgctcgctgaacagcacggcaagaccttc
cgcaagcgctaccaaggcctacccgtgcgggtggcggtgctttcccgcttcaccccggag
aaggaggaggcggagatcctcaagggcttggcggaagggggggtggacatcgtcatcggc
acccaccgcctcctccagccggatgtgcgcttcagggacctgggcctcctcatcgtggac
gaggagcaccgctttggtgtggcccagaaggagaggatccgggagctcaaggcggaggtg
gacaccctctacctctcggccacgcccatcccccgcaccctttatagcgccctggtcggc
ctaaaggacctctccagcatccagaccccacccccggggcggaagcccatccgcaccttt
ctcgccccctttgaccccctcctggtgcgggaggctatcctccaggagctggaaaggggc
ggcaaggtcttttacgttcacgaccgggtagcctccattgaggccaggcggcgttacctg
gaaaacctggtccccgaggcccgcatcggcgtggtccacggccagatgccggaaggcctt
gtggaggaaaccatgctcctcttcgccgaaggggcttacgacgtgctcctggccaccacc
attattgagtctggcctggacgtgcccgaggccaacaccatcctcattgagcgggcggac
cggttgggcctcgccaccctgtaccagctacggggccgggtgggccgccgggaccaggag
gcttatgcctacctcttccacccgcctaggcttaccgaggcggcggagaagcgccttaac
gctattgccgacctctccgacctgggctccggccacctcctggcggagagggacatggag
atccggggggtagggaaccttttgggccccgagcagcacgggcacatccgcgccctttcc
ctggaggtctacacggacctcctggaggaagccatccgcaagctcaagggggaggccaag
gaggaaaggccccacgtcaccctggacctggccctttccgcccgcctgccggcggaatac
gtggggagcctcgaggcgcgaagccgctactacggccgcttcgccgaggcgaggagcctg
gccgagctatcccggctggtgcgggagcttaaggagcggtatggccccttgcccgaggag
gcggaaaacttcgtgaacctggcccgcctccgcctggtggccgagcgcaagggggtggtt
tccctcaccgaggacctcacccacctgcaggccgtttttggctactggcccttggactac
gatgcccgggggctcaaaggccttcccttccgcctggagatcacccagtaccctcccggc
ttccgcctggaaaagaaaggattaaggccccgggactatcccgaagccttaatggaaacg
ctgtttcttttcgcagaccgttag
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