Trematomus bernacchii (emerald rockcod): 117468744
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Entry
117468744 CDS
T09643
Symbol
ddx6
Name
(RefSeq) probable ATP-dependent RNA helicase ddx6
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
tben
Trematomus bernacchii (emerald rockcod)
Pathway
tben03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tben00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
117468744 (ddx6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tben03019
]
117468744 (ddx6)
03036 Chromosome and associated proteins [BR:
tben03036
]
117468744 (ddx6)
Enzymes [BR:
tben01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
117468744 (ddx6)
Messenger RNA biogenesis [BR:
tben03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
117468744 (ddx6)
mRNA degradation factors
5'-3' decay
Decapping complex
117468744 (ddx6)
Chromosome and associated proteins [BR:
tben03036
]
Eukaryotic type
Gene silencing
piRNA pathway
117468744 (ddx6)
BRITE hierarchy
Motif
Pfam:
DEAD
Helicase_C
CMS1
SNF2-rel_dom
AAA
Motif
Other DBs
NCBI-GeneID:
117468744
NCBI-ProteinID:
XP_033968890
EnsemblRapid:
ENSTBNG00005017455
LinkDB
All DBs
Position
Unknown
AA seq
481 aa
AA seq
DB search
MSTARTENPMILGLSNQNGQLRGSVKTAGAPGGGVGGPQQQLNQMKGTINNGNSLPAPTT
NAVIKLGDDWKKNLKLPPKDTRMRTSDVTATKGNEFEDYCLKRELLMGIFEMGWEKPSPI
QEESIPIALSGRDILARAKNGTGKSGAYLIPLLERIDLKRDCIQAMVIVPTRELALQVSQ
ISIQVSKHMGGVKVMATTGGTNLRDDIMRLDETVHVVIATPGRILDLIKKGVAKVNQVHM
VVLDEADKLLSQDFVSMMEEMLGFLAKQRQILLYSATFPLSVQKFMNAHLQKPYEINLME
ELTLKGVTQYYAYVTERQKVHCLNTLFSRLQINQSIIFCNSSQRVELLAKKISQLGYSCF
YIHAKMRQEHRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKLGETYLHRI
GRSGRFGHLGLAINLITYDDRFNLKGIEEQLGTEIKPIPGIIDKSLYVAEYHSESGEEIK
P
NT seq
1446 nt
NT seq
+upstream
nt +downstream
nt
atgagtaccgccaggacagagaacccaatgattttgggcttgtccaaccagaatggacag
ctccgaggttcagtgaagactgctggagcgccaggtggaggtgtgggaggccctcaacag
cagctcaatcagatgaaaggcacaatcaacaatggcaattccctaccggcccctacaacc
aacgctgtcatcaagcttggagacgactggaagaaaaatttgaaattgcccccaaaagac
acgaggatgagaacatcggatgtgactgcaactaaaggcaacgagtttgaagattactgc
ctaaagagggagctgctaatgggaatctttgagatgggctgggaaaagccctctccaatc
caggaggaaagcattcccatcgcactgtcaggaagagatatcttggccagagccaagaac
ggcacagggaagagtggagcctacctcattcccttacttgaacgcattgacctgaagagg
gactgcatacaagctatggtcatagtacccaccagagaactggctctgcaagttagccaa
ataagtatccaggtcagcaaacacatgggtggagtgaaggtaatggcgaccacaggtgga
accaacctccgcgacgacatcatgagacttgatgaaacggtacatgtggtcattgctact
cctgggaggattttggacctcatcaagaaaggagtggccaaagtcaatcaagtgcacatg
gtcgttctggatgaagctgacaaactcctgtctcaggactttgtgtccatgatggaggag
atgctgggcttcctggccaaacagaggcagatcctgctttactctgctacctttcctctc
agcgtgcagaagtttatgaacgcacacttgcagaaaccctatgagatcaacctgatggag
gagcttacactgaagggtgtgactcagtattacgcttatgtaactgaaaggcaaaaggtc
cattgccttaacaccttgttctccaggctccagatcaaccagtctataatcttctgcaac
tcctctcagcgagtagagctccttgccaagaagatctcccagctcggttattcatgtttc
tacattcatgccaagatgagacaggagcatcgcaaccgtgtgttccacgacttcagaaac
ggcctctgccggaatcttgtctgcactgacctcttcacaagaggaattgacattcaagct
gtgaatgttgtgatcaatttcgactttcccaagctgggagaaacgtaccttcatcgcatc
ggtagatctggccgatttggacacttgggtctggccatcaacctcatcacctacgatgac
cgcttcaacctgaaggggatcgaggagcagctcggaacagagatcaagcccatccccggc
atcatcgacaagagcttatacgtggcagagtaccacagcgagagtggcgaagaaatcaag
ccatga
DBGET
integrated database retrieval system
