Trematomus bernacchii (emerald rockcod): 117479409
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Entry
117479409 CDS
T09643
Symbol
samhd1
Name
(RefSeq) deoxynucleoside triphosphate triphosphohydrolase SAMHD1
KO
K22544
deoxynucleoside triphosphate triphosphohydrolase SAMHD1 [EC:3.1.5.-]
Organism
tben
Trematomus bernacchii (emerald rockcod)
Pathway
tben03250
Viral life cycle - HIV-1
tben04623
Cytosolic DNA-sensing pathway
Brite
KEGG Orthology (KO) [BR:
tben00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
117479409 (samhd1)
09150 Organismal Systems
09151 Immune system
04623 Cytosolic DNA-sensing pathway
117479409 (samhd1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tben03400
]
117479409 (samhd1)
DNA repair and recombination proteins [BR:
tben03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
117479409 (samhd1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SAM_2
SAM_1
HD
PDEase_I
HD_assoc_2
Motif
Other DBs
NCBI-GeneID:
117479409
NCBI-ProteinID:
XP_033982252
EnsemblRapid:
ENSTBNG00005008094
LinkDB
All DBs
Position
Unknown
AA seq
625 aa
AA seq
DB search
MENRKRQLEAVVTDNHCFKTPEKRVSLVRLLDSDYMRWGVEDTCQYLRREDLVEWEDIFK
AQKITGVGLRYLSDSDLEKIGIKCLGDRLKILHSFRKLWQIGAEPNKVFNDPIHGHVELH
PLLVKIIDTPQFQRLRNLKQLGGTYYVFPGASHNRFEHSIGVGHLAGRLVEALNERQPEL
LISRRDILCVQIAGLCHDLGHGPFSHMFDSKFIPRARPGISWKHENASLSMFDYLVKDNG
LKPVMEQHGLVLPEDLDFIKEQIAGPPNSVSVQDQKWPYKGRPEDKSFLYEIVANKRNGI
DVDKWDYFARDCYHLGIKNNFDHGRFIKFARVCEVDGQKHICTRDKEVGNLYDMFHTRNC
LHRRAYQHKVGNIIETMITEAFLKADKHIQIEGSGGRKFTLSTAIDDMEAYTKLTDHVFE
RILHSSSPELAESRQILRNIVCRRLYKCLGQTQAEQPLSVTPETIRKWEEDLAKSLRQSC
SKDGRLQPEDFVVSVIYMDYGMKDKNPINNVRFYCKDDSSKAIQIRKNQVSKLLPEQFAE
QLIRVYCKKTDDRSLEAAKKHFVQWCINMNLSKPQDGDIIAPELTPQKPSWSNNNEGEGS
ESGGSTEVNCATVNGQKKAKVQLFK
NT seq
1878 nt
NT seq
+upstream
nt +downstream
nt
atggagaaccgaaaacggcagttggaggcagttgtgaccgacaaccactgcttcaaaacg
ccggagaaaagggtgtcattggtccggctgctggactccgactacatgcgatggggagtg
gaagatacatgtcagtacctgcgaagagaagatctcgtagagtgggaagatatatttaaa
gcacaaaagatcacaggtgttgggctgcggtatctcagtgactctgatctggagaagatt
ggtataaagtgccttggtgaccgtctgaagatccttcatagcttcaggaagctgtggcag
ataggagcagagccaaataaggtgtttaatgatcctattcacgggcatgtggagttgcac
cctcttctcgtcaaaatcatcgacacgcctcagttccagagactacgaaacctcaagcag
ctcggagggacctattatgttttccccggagcatcccacaaccggtttgaacacagcatt
ggagtgggacacttggcagggcggctcgtagaagctctgaacgagaggcagccagagctc
ctcatctctcgcagagacatcctttgtgtgcagatcgctgggctctgccatgacctgggt
catgggccattctcccatatgttcgacagcaagttcatccccagagcacgtccaggaatt
tcctggaagcatgagaacgcctctctgagcatgttcgactacctggtgaaggataatggc
ctgaagccggtgatggagcagcacggcctggtgctgcccgaggacctggacttcattaag
gaacagattgctggaccaccgaactctgtttcagttcaagaccagaagtggccatataaa
ggccgtccagaagacaagtccttcctttatgaaatcgtggccaacaaaaggaacggcatt
gatgtggacaaatgggattactttgccagggactgctaccacctgggcatcaagaacaac
tttgaccatggccgcttcataaagtttgccagggtgtgtgaggtggacgggcagaagcac
atctgcactagagacaaggaggtgggcaatctgtatgacatgttccacacgaggaactgt
ctccacagaagagcctaccagcacaaagtgggcaacatcatagagactatgatcacagaa
gcctttttaaaggcagacaagcacatccagattgaaggctccggagggaggaagttcacc
ctctccacagccatagatgacatggaggcctacaccaagctgacagatcatgtgtttgaa
agaattctccactcttcctctccggagctggctgagtcgaggcagattctacgcaacatc
gtctgtcgacgcctctataaatgtctgggccaaactcaggcagagcaacccttgagtgtc
accccggagacaattcgcaaatgggaagaagatctggctaaatccctccgtcagagctgc
tctaaggatggcaggctgcagccggaggactttgtagttagtgtcatctatatggactat
ggcatgaaggataagaaccccatcaacaatgtgcgtttttattgcaaagatgactcgtcc
aaagccatccagatccgcaagaaccaggtgtctaaacttctcccagagcagtttgctgag
cagctcatcagggtttactgcaagaagaccgacgacaggagtctagaggctgccaagaaa
cactttgtccagtggtgcatcaacatgaacctctcaaagcctcaggatggagacataata
gcacctgagctgacgcctcagaaacccagctggtcgaacaacaatgagggcgagggcagt
gagagtggcggctccacggaggtaaactgtgctactgtgaatggacagaagaaagccaaa
gttcagctgtttaaatga
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