Trematomus bernacchii (emerald rockcod): 117481030
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Entry
117481030 CDS
T09643
Symbol
upf3a
Name
(RefSeq) regulator of nonsense transcripts 3A isoform X1
KO
K14328
regulator of nonsense transcripts 3
Organism
tben
Trematomus bernacchii (emerald rockcod)
Pathway
tben03013
Nucleocytoplasmic transport
tben03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
tben00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
117481030 (upf3a)
03015 mRNA surveillance pathway
117481030 (upf3a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tben03019
]
117481030 (upf3a)
Messenger RNA biogenesis [BR:
tben03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
117481030 (upf3a)
mRNA cycle factors
P-body specific factors
117481030 (upf3a)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Smg4_UPF3
Motif
Other DBs
NCBI-GeneID:
117481030
NCBI-ProteinID:
XP_033984374
EnsemblRapid:
ENSTBNG00005025011
LinkDB
All DBs
Position
Unknown
AA seq
481 aa
AA seq
DB search
MRSEKDQMTVGKEKSVVEIQFRDIPREQENIPGNLKQKEEKKEVFTKVVIRRLPPNLSKD
QLEEQLSPLPSYDYFEFFPADQSLYPHLFSRAYINFKIPEDILLFRDRFDGYVFIDNKGQ
EYPAVVEFAPFQKISKKKLKKKDAKTGSIEEDPEYRRFLENYSCDEEKSMANPETLLGEI
EAKTRELIAKRTTPLLEYIKNKKIEKQRIREEKREERRRRELEKKRQREEEKRKRREEER
RKRKEAEKQRKLSDKDIKIKLLKKSDRDDDVDSDRMKDKSDIGETDRCKWEKAGGQMKSK
DPKEKGQPESDKEQREQHGRRQREKDHRGKDEERKRQRHHYEFDKFMRRKDETKWGKGYC
QDRAKKEGHHHGYSYCPDGGDKLGKEDREDVGNRKERLRNKVSEKVLQTPTTEQKHANKD
RPAMQLYQPGARNRKRMSSAGKGYDCIAVGHSPEPGTEHCYEAVPMATGLEKGYEKSKEE
Q
NT seq
1446 nt
NT seq
+upstream
nt +downstream
nt
atgaggtctgaaaaggaccaaatgaccgtgggcaaggagaaaagcgtcgtggagatacag
tttagagacatcccaagagagcaggaaaacattcctggaaacctgaagcagaaagaagag
aagaaagaggtttttaccaaggtcgtgattcgaaggcttccaccaaacctgtcaaaggac
cagctagaggaacagctcagtccccttccgtcctacgactattttgagttctttccagct
gaccaaagtctctatccccacttgttctccagagcatatattaattttaaaatcccggaa
gatatccttctgttcagggaccgatttgatggctacgtcttcattgacaacaagggacaa
gagtaccctgcagtggtggagtttgccccctttcagaaaatctcaaagaagaagctaaaa
aagaaagatgccaaaaccggaagcattgaagaagacccagaatataggcggttcttggag
aattactcctgtgatgaggagaagtctatggccaaccctgagactctgctgggagagata
gaggccaagaccagagagctcatagccaaacggacaacaccgctgttggaatacatcaaa
aataagaaaattgagaaacagagaataagagaggagaagagagaggagcggaggagaaga
gagctcgaaaagaaacggcaaagagaggaggaaaagagaaagcgaagagaggaggagaga
cgcaaacggaaagaggcagagaagcagaggaaactgtctgataaagacattaaaatcaag
ctccttaagaagagtgacagggacgatgacgtggattcagaccggatgaaggacaaaagt
gacattggggagacagacagatgcaaatgggagaaagccggaggacaaatgaagtcaaag
gaccccaaagaaaaaggtcaacctgagagcgacaaggagcagagagagcagcacggccgc
aggcagagagaaaaggaccatcgggggaaagatgaagagaggaaacgacagaggcaccac
tatgagtttgacaagtttatgcgccgcaaagatgagacaaaatgggggaagggctactgc
caagacagagccaagaaagaggggcaccatcatggctattcttactgccctgatggtgga
gacaaactggggaaggaggacagggaggacgtgggtaacaggaaggaacgcctccgaaac
aaggtgagcgagaaggtgctgcagactcccaccacagaacaaaaacatgcaaataaggac
cgtcccgccatgcagctctatcagccgggcgcacgcaacaggaagcgcatgagctcggct
ggaaaaggctacgactgcatcgctgtgggacactcaccggagcccgggacggaacactgc
tacgaggctgtccccatggcaacagggctggagaaggggtacgagaaaagcaaagaggaa
cagtga
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