Trematomus bernacchii (emerald rockcod): 117486002
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Entry
117486002 CDS
T09643
Symbol
prkn
Name
(RefSeq) E3 ubiquitin-protein ligase parkin
KO
K04556
parkin [EC:
2.3.2.31
]
Organism
tben
Trematomus bernacchii (emerald rockcod)
Pathway
tben04120
Ubiquitin mediated proteolysis
tben04137
Mitophagy - animal
tben04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
tben00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
117486002 (prkn)
04120 Ubiquitin mediated proteolysis
117486002 (prkn)
09140 Cellular Processes
09141 Transport and catabolism
04137 Mitophagy - animal
117486002 (prkn)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
tben04131
]
117486002 (prkn)
04121 Ubiquitin system [BR:
tben04121
]
117486002 (prkn)
03029 Mitochondrial biogenesis [BR:
tben03029
]
117486002 (prkn)
Enzymes [BR:
tben01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.31 RBR-type E3 ubiquitin transferase
117486002 (prkn)
Membrane trafficking [BR:
tben04131
]
Autophagy
Mitophagy
PINK1-Parkin associated proteins
117486002 (prkn)
Aggrephagy
Other aggrephagy associated proteins
117486002 (prkn)
Xenophagy
Other xenophagy associated proteins
117486002 (prkn)
Ubiquitin system [BR:
tben04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
RBR proteins
117486002 (prkn)
Mitochondrial biogenesis [BR:
tben03029
]
Mitochondrial quality control factors
Mitophagy factors
Parkin-dependent mechanism factors
117486002 (prkn)
BRITE hierarchy
Motif
Pfam:
zf-RING_14
zf-RING_12
ubiquitin
Rad60-SLD
IBR
zf-RING_UBOX
Motif
Other DBs
NCBI-GeneID:
117486002
NCBI-ProteinID:
XP_033990620
LinkDB
All DBs
Position
Unknown
AA seq
436 aa
AA seq
DB search
MIVFVRYNLGEEVPLELHEEARVSDLKEAVGSQQGVRPELLRVLFAGRELRSTSTLQESD
LPEQSTVHVVLPPSDSSPPLPPSDSSPSLPPSDSSPSLPPSDSSPSLPPSDSSPSLPPSD
PQTGGGASDEVPAAGETGSCSSFFVFCKTCRSVQPGKLRVRCKTCRNTTLTLSRGPSCWD
DVLLRGRIHGVCQSDGCQGNEAEFYMKCASHPTSDDDLSVALDLIMTNIRSVPCIACTDI
MPVVLVFPCSERHVICLPCFRGYCEVRLREGQFVLHAEVGYTLPCAAGCADSLIKELHHF
RILGEEQYGRYLQFGAERCLLLIGGLMCPSAGCGAGLVPPPGIKRLQCDPRLGCGFIFCR
DCRGGGPRGGVSSHTGPAHSSRPTGVLRGGGGVSEGEVGARLPAAPEGNHQTLPSVLRPS
GERRRLYAHVLPALQR
NT seq
1311 nt
NT seq
+upstream
nt +downstream
nt
atgatagtgtttgtgaggtataacctcggggaggaggttcctctggagctgcacgaggag
gccagagtttctgatctgaaggaggcggtagggtctcagcagggggtccgaccggagctg
ctgagggttctgttcgctgggagggagctgaggagcacctccaccctgcaggaaagtgac
ctcccggagcagagcaccgttcatgtggtcctccccccttcggactcctccccccccctc
cccccttcggactcctccccctccctccccccttctgactcctccccttccctcccccct
tcggactcctccccctccctccccccttctgactcctccccttccctccccccttctgac
ccccaaacagggggaggagcatcagacgaggttccggctgcaggtgagacaggttcctgc
agttctttcttcgtgttctgtaagacctgcaggtcggtgcagccggggaagctgagggtc
cgctgcaagacctgcaggaacacaacgctgactctcagcaggggtccgtcctgctgggat
gacgttctcctccgaggccgtatccatggtgtgtgtcaatcagacggttgtcaaggcaac
gaagcagagttctatatgaagtgtgcgtcccacccgacctccgacgacgacctctctgtg
gccctggaccttatcatgaccaacattaggagcgtgccctgcatcgcctgcaccgacatc
atgccagtggtgctggtgttcccctgctctgagcgtcatgtgatctgcctgccgtgtttc
cgtggttactgtgaggtcagactgagggaggggcaattcgtcctccatgctgaggtcgga
tacactctgccctgcgcagccggctgcgctgactctctcattaaagagctgcatcatttc
aggatcctgggagaggaacagtatgggcggtacctgcagtttggggcggagcgctgcttg
ctgctgattggaggactgatgtgtccgtcagcgggctgtggggcggggcttgtgcccccc
ccaggtataaagcggctgcaatgtgaccctcggctcggctgcggattcatcttctgcaga
gactgcaggggggggggcccacgagggggcgtgtcctcccacacaggccccgcccacagc
agcagacccacaggtgttctccgtgggggagggggcgtctcagagggggaggtgggagct
cgcctccctgcagctcctgaaggaaaccaccagaccctgccctcagtgctgcgccccagt
ggagagagacggcggctgtatgcacatgtcctgcccgctctgcagcgctga
DBGET
integrated database retrieval system
