Trematomus bernacchii (emerald rockcod): 117492722
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Entry
117492722 CDS
T09643
Symbol
dhx58
Name
(RefSeq) probable ATP-dependent RNA helicase DHX58
KO
K12649
ATP-dependent RNA helicase DHX58 [EC:
5.6.2.6
]
Organism
tben
Trematomus bernacchii (emerald rockcod)
Pathway
tben04622
RIG-I-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
tben00001
]
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
117492722 (dhx58)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
tben04054
]
117492722 (dhx58)
Enzymes [BR:
tben01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
117492722 (dhx58)
Pattern recognition receptors [BR:
tben04054
]
Cytoplasmic pattern recognition receptors
RIG-I-like receptors
117492722 (dhx58)
BRITE hierarchy
Motif
Pfam:
RIG-I_C
RIG-I_C-RD
ResIII
DEAD
Helicase_C
SWI2_SNF2
AAA_19
AAA_22
TTRAP
Motif
Other DBs
NCBI-GeneID:
117492722
NCBI-ProteinID:
XP_033998997
EnsemblRapid:
ENSTBNG00005005830
LinkDB
All DBs
Position
Unknown
AA seq
680 aa
AA seq
DB search
MAGFELYAYQKEVAERALHKENIIIWLPTGGGKTRAAVYVAKKHLETTPRAKVVVLVNKV
HLVDQHYKNEFKPHLGRDYNVLAVSGETVEKDFFGKVLQEKDVVICTAQILHNALIDKEE
DKHVELSDITLLIIDECHHTNKDAVYNKVMTIYLEKKLKGEKSLPQILGLTASPGTGGAK
DLQKAVEHVLQICANLDSAIVSTKNAVAELKEKVPRPIKQFDIVDARPEDPFGDQLKSMM
LMIHEFMNIPPSFRLRQCGTQEYEADVVELEKNGVKKDDRQLAQCALHLRQYNDALLIND
TLRMIDAYLSLEDFYSNKITREIDGTDVFLVGLFQENQAELEILAKDSRYGNPKMDKLKS
TLLEQFVPSENSKGIIFSKTRKSTHCLNDWVLNDIELKEAGIKPAILTGAGNGISYMTLN
EQSETIRNFRQGAVNLLVSTSVAEEGLDIPECNLVVRYGLLTNEIAQQQASGRARAKDSR
YSVVAQRGGKEVRREHINDHLKELTEKAIAKVQEMSPREFSKKIAALQREAAIQRSLDEK
LKMEKRSRYPAASVNLVCRSCFTSVAPGSDLRLLDGVHYVNVNPDFEKNYKVGGQVMLEK
SFEDWEPGCKICCRKCDKDWGYEMKYKVHALLPNLSIKNLALDTPNGDRLTLKKWKDIPF
IVEDFSFEEYCHENHPDLFD
NT seq
2043 nt
NT seq
+upstream
nt +downstream
nt
atggcaggttttgaactgtatgcataccagaaggaagtggctgagagggctcttcacaaa
gaaaacatcatcatttggctgccgacaggaggtggaaagacccgagctgctgtctatgtg
gccaaaaaacacctggagaccaccccacgggccaaggtggtggtcctggtgaacaaggtt
caccttgtagatcaacattacaaaaatgagttcaaacctcacctgggccgagactacaac
gtgttggcggtcagcggagagacagtggagaaggacttctttgggaaagtgttgcaagaa
aaggacgttgtcatctgcacagcacagattttgcataatgctctgatagacaaggaggag
gacaaacatgtggagctctcagatattactctactgataatcgatgagtgtcaccacacc
aacaaagatgcagtctacaacaaggtgatgacaatctacctggagaaaaaactaaaagga
gagaaatcattgccacagatcctgggtctcactgcatcaccggggacagggggtgcaaag
gacttacaaaaagctgtggagcacgtactgcagatttgtgccaaccttgactcagccata
gtttcaactaaaaacgctgtcgctgagctgaaagagaaagtccccaggcccatcaagcag
ttcgacattgtggacgcaagacctgaggatccgttcggggatcaactgaagtccatgatg
ctgatgatccatgagttcatgaacattcctccaagcttcagactgagacagtgtggcact
caagagtatgaggcagatgtggtggaactcgagaagaacggagtcaaaaaggacgacaga
cagctagcacaatgtgcacttcacctccgacagtacaacgatgccttgctcatcaacgac
acgctgcggatgatagatgcctatctctccctggaggacttctacagcaacaagataacc
agagaaattgatggaacagacgtcttcctggtggggcttttccaagagaatcaggcggag
ctggagatattggcaaaagattctcgctatggcaacccaaagatggacaaactaaaaagc
actctgctagaacagtttgttccaagtgagaattcgaaggggatcattttcagcaaaacc
cgtaaaagcacccactgcctgaacgactgggtcctcaacgatatagagttaaaggaagcg
ggtatcaagccagccatcctcactggagctggcaacggtatctcttacatgacattgaac
gagcagtcagaaacaatccgcaatttccgccaaggtgctgtcaacctcctggtctccacc
agtgtggctgaagaaggcctcgacatccctgaatgcaacctggtggtacgctacggactg
cttacaaatgagattgcccagcagcaggccagcggacgcgcccgagcaaaagacagccgg
tattcagtggtcgcccagagaggggggaaggaagtgaggcgagagcacatcaatgatcat
ctgaaagagctgacagaaaaagctattgctaaggtccaagagatgagcccccgagagttc
tccaaaaagatagctgcactgcaaagggaggcagctattcaaaggagtcttgatgagaaa
ctcaaaatggagaagaggagtcgctaccctgctgctagtgtcaacctggtgtgtcgaagc
tgcttcacctctgtggcccctggcagtgacctgagactcctggatggtgtgcactatgtc
aacgtcaaccctgactttgagaaaaactacaaagtcggtgggcaggtgatgctggaaaag
agttttgaggactgggagcctgggtgtaagatctgttgcagaaaatgcgacaaggactgg
ggatatgagatgaaatacaaagtacatgccctgctgccaaatctaagcattaagaattta
gccctggatacccccaatggcgacaggctcactttgaaaaagtggaaggatatccctttc
attgtggaggacttcagctttgaagagtactgccatgagaaccaccccgacctcttcgat
tga
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