Trematomus bernacchii (emerald rockcod): 117495258
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Entry
117495258 CDS
T09643
Name
(RefSeq) regulator of nonsense transcripts 1 isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
tben
Trematomus bernacchii (emerald rockcod)
Pathway
tben03013
Nucleocytoplasmic transport
tben03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
tben00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
117495258
03015 mRNA surveillance pathway
117495258
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tben03019
]
117495258
Enzymes [BR:
tben01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
117495258
5.6.2.5 RNA 5'-3' helicase
117495258
Messenger RNA biogenesis [BR:
tben03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
117495258
mRNA cycle factors
Common to processing body (P body) and stress granule
117495258
BRITE hierarchy
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
DEAD
nSTAND3
AAA_16
Helicase_RecD
ATPase
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
AAA_5
Motif
Other DBs
NCBI-GeneID:
117495258
NCBI-ProteinID:
XP_034002299
EnsemblRapid:
ENSTBNG00005012011
LinkDB
All DBs
Position
Unknown
AA seq
1102 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEETELLGADTQGSEYDFTDFTLPSQTQTQGQTQSQLDNQVNG
PDEGLHNGGVDDSVAKASQLLAELNFEEDEEDSYYTKDLPLHACSYCGIHDPACVVYCNT
SKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLECYNCGCRNVFLLGFIPA
KADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQITA
QQINKLEELWKDNPTATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKK
LKESQTQDSITVRWDLGLNKKRIAYFTLPKTDSGDMRLMQGDEICLRYKGDLAPLWKGIG
HVIKVPDKDYGDEIAIELRSSVGAPVEIPHNFQVDFVWKSTSFDRMQSALKTFAVDETSV
SGYIYHKLLGHEVEDVTIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTG
KTVTSATIVYHLSRQGNGPVLVCAPSNIAVDQLTEKIDKTGLKVVRLCAKSREAIESPVS
FLALHNQISNMDSMPELQKLQQLKDETGELSSADEKRYRALKRTAERELLMNADVICCTC
VGAGDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAK
AGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRIKKGFDF
QWPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTRLLKAGAKPDQIGIITPYE
GQRSYLVQYMQFSGSLHTKLYQQVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPR
RLNVALTRAKYGVIIVGNPKALSKQPLWNNLLNNYKEQKVLVEGPLNNLRESLMQFSKPR
KLVNTINPGGRFMSTAMYDAREALIPGSAYDRSNAGGRPSNMYFQTHDQIGMIGAGPGHM
AMNIPIPFNLVMPPMPPPSYLGQTNGPAAGRGAMKGKPGRGGRQRVRGAAHQGASQGNGP
NSQASQDGASQPFSQGPLTQGYINMSQPSQMSQPGLSQPELSQDSYLGDEFKSQIDVALS
QDSTYQGERAYQHGGVTGLSQY
NT seq
3309 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtggaggcgtacgggccgagctcccagaccctcaccttcctagacaccgaggaa
acagagttgctaggagcggacacccagggctccgaatacgactttaccgacttcaccctt
cccagccagacgcaaactcaaggccagacccagagccagctggacaaccaggttaatggt
cctgatgagggtcttcacaacggtggagtggatgactccgtggccaaagcaagccagctg
ttggccgagctcaactttgaggaagatgaagaagactcgtactacaccaaagacctgcct
ctgcacgcatgcagctactgtggtattcatgatccagcgtgcgtggtgtactgcaatacc
agcaagaagtggttctgtaatggacgtggtaacacatctggcagtcacattgtgaaccac
ttggtgagagccaaatgcaaggaggtgacgctgcataaagatgggccgctgggcgagact
gtgctggagtgttacaactgcggctgtcgcaatgtcttcctcctgggctttatcccggcc
aaggctgactctgtggtggttcttttgtgcaggcagccctgtgccagccagagtagtctg
aaggacatcaactgggacagctcacagtggcagcccctgatccaggaccgctgcttcctg
tcctggctggtaaagatcccatcggagcaggagcagcttcgcgcccgtcagatcactgcc
cagcagatcaacaagttggaggagctctggaaggacaaccccactgccaccttggaagac
ctggagaagcctggagtggacgaggagccccagcatgtgctgctacgctatgaggacgcc
taccagtaccaaaacatctttggccctttggtcaaactggaggctgactatgacaagaag
cttaaggagtcccagactcaagatagtataacagtcaggtgggacctggggctgaataaa
aagcggattgcctatttcacactgcccaagacggactcaggtgatatgcggctgatgcaa
ggtgacgagatctgcttgcggtacaagggagacctggccccgctgtggaaaggcattggt
catgtcatcaaagtccccgacaaagactatggagatgaaattgccattgagctgaggagc
agtgttggagcacctgtggaaatcccgcacaacttccaggtggactttgtgtggaagtcc
acatcctttgacaggatgcagagcgccctgaagacgtttgcggttgacgagacctccgtg
tctggttacatttaccacaaactgctgggccacgaggtggaggatgtgaccatcaagtgc
cagctgccaaagcgcttcactgcccagggcctgccagacctcaatcactcacaggtgtac
gctgtgaagacggtgctgcagaggcctctcagtctgatccaggggcctcctggcactggg
aagacggtcacctctgccactatcgtctaccacctgtcccgacagggcaacggaccagtt
ctggtttgtgctcccagtaacattgctgtggatcagttgactgagaagattgacaagact
ggactgaaggtcgtcaggctgtgtgccaagagcagggaggccatcgagtcgccagtatcc
ttcctggctctgcacaaccagatcagcaacatggacagtatgccggagcttcagaaactt
cagcagctgaaggatgagaccggtgagctgtcgtctgccgatgagaagcgttacagggct
ctgaagcgcaccgctgagagggagctgctcatgaatgctgatgttatctgctgtacctgc
gtcggcgctggagaccctcgtctggccaagatgcagttccgctccatcctgattgatgag
agcacccaggccacggagccagagtgcatggtgcccgtggtgcttggagccaagcagctc
attctggtgggtgatcactgccagctcggtcccgtggtgatgtgtaagaaagcagccaaa
gcaggtctgtcccagtccctgtttgagcgcctggtggtcctggggatccggcccatccgc
ctgcaggtccagtaccgcatgcaccctgctctcagcgccttcccctccaacatcttctat
gagggctctctgcagaacggagtcactgcagctgaccgcatcaagaaagggttcgacttc
cagtggccacagcccgacaaacccatgttcttctacgtgactcagggtcaggaggagatt
gccagctccggaacctcctaccttaacaggacggaggctgccaacgtagagaagatcacc
accaggctgctgaaggctggagccaaacctgaccaaatcggcatcatcaccccgtacgag
ggtcagcgctcctacctggtccagtacatgcagttcagcggctccctgcacaccaaacta
tatcagcaagtggaaattgccagtgtggacgccttccagggcagagagaaggacttcatc
atcctgtcctgtgtgcgtgccaacgagcaccagggcatcggcttcctgaatgacccgcgt
cgtctcaacgtggcgctgaccagagccaagtacggtgtgatcatcgtgggaaaccccaag
gccctctccaagcagccgctgtggaacaacctgctgaacaactacaaagagcagaaagtc
ctggtggagggacccctcaacaacctgagggagagcctcatgcagttcagcaagccccgc
aaactggtcaacacaatcaaccctggcggacgttttatgagcactgcaatgtacgacgcc
cgcgaggccctcatccctggctccgcctacgaccgcagcaatgccggcggacgtccgtcc
aacatgtactttcaaactcacgaccagattgggatgattggggcaggacccggtcacatg
gctatgaatatccccattcccttcaacctggtgatgcccccaatgcctccgcccagttac
ctagggcagaccaacggccctgctgcaggtcgtggagcgatgaagggtaagcctgggcgt
ggcgggcggcagagggtccgcggggcggcccaccagggggccagtcagggtaacggacca
aacagccaggccagccaggacggggcctcccagcccttctcccaggggccgctgactcag
ggctacatcaacatgagccagccctctcagatgagccagcctggcctctcccagccggag
ctctcccaggacagctacctaggcgatgagttcaagtcccagatcgacgtggctttgtcc
caggactctacttaccagggtgaacgtgcataccaacatggtggggtgactggactgtca
cagtactag
DBGET
integrated database retrieval system
