Trematomus bernacchii (emerald rockcod): 117499856
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Entry
117499856 CDS
T09643
Symbol
thbs2a
Name
(RefSeq) thrombospondin-2
KO
K04659
thrombospondin 2/3/4/5
Organism
tben
Trematomus bernacchii (emerald rockcod)
Pathway
tben04145
Phagosome
tben04510
Focal adhesion
tben04512
ECM-receptor interaction
tben04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
tben00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
117499856 (thbs2a)
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
117499856 (thbs2a)
09144 Cellular community - eukaryotes
04510 Focal adhesion
117499856 (thbs2a)
09142 Cell motility
04820 Cytoskeleton in muscle cells
117499856 (thbs2a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
tben04131
]
117499856 (thbs2a)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
tben04147
]
117499856 (thbs2a)
00536 Glycosaminoglycan binding proteins [BR:
tben00536
]
117499856 (thbs2a)
Membrane trafficking [BR:
tben04131
]
Endocytosis
Phagocytosis
Opsonins
117499856 (thbs2a)
Exosome [BR:
tben04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
117499856 (thbs2a)
Exosomal proteins of colorectal cancer cells
117499856 (thbs2a)
Exosomal proteins of bladder cancer cells
117499856 (thbs2a)
Glycosaminoglycan binding proteins [BR:
tben00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
117499856 (thbs2a)
BRITE hierarchy
Motif
Pfam:
TSP_C
TSP_3
TSP_1
TSP1_spondin
VWC
EGF_3
TSP1_ADAMTS
TSP1_CCN
cEGF
Laminin_G_3
EGF
Laminin_G_2
Motif
Other DBs
NCBI-GeneID:
117499856
NCBI-ProteinID:
XP_034008399
EnsemblRapid:
ENSTBNG00005019271
LinkDB
All DBs
Position
Unknown
AA seq
1185 aa
AA seq
DB search
MILRRCLFLLLLSFNFLHALPQDGEQEDETLFDLFEITHISRKTLGAKQFRGQDSEAPAF
RFIRFDHLPPVSTPILKQILRQIQNNEGFVFVASIRQDRASRGTLIGLETSDGRRQFEIV
SNGRANTLDLVYWVDGSQNVVSFEDVDLSDSQWKNITLHVHGENANLFVGCSLVDSFILD
EPFYEHLQAEGSLMYVAKGSTRENHFRGLLQNVRFIFDTTVEDILLSRDCEVLKQDDANI
VSESREIVDVSPSITTNIIGQKTDDVGSDMCERSCEELSTMFQELNGLRVVVSNLIDGLQ
KVTEENTVMKEALGKMKKPKEKNMCWQDGRLFDDKEDWVVDSCTKCTCQESKIVCHQITC
PPVACASPSFIDGECCPVCLPIDSEDGWSPWSEWTECTVTCGTGTQQRGRSCDATSNPCS
GSSIQTRKCSLSRCDSRVRQDGGWSLWSPWSSCSVTCGEGQITRIRHCNAPMPQLGGTEC
EGNGRETQRCTAEPCPIDGGWGPWSPWATCSSTCGGGIKSRARVCNSPQPQYGGKKCIGE
AEDSDSCNKKTCPVDGCLSNPCFGGVDCNSSPDGSWECGPCPAGFRGNGTHCEDINECDM
VSDVCYKGSGVQRCVNTNPGFHCLPCPKRYKGTQPFGMGVEAAKKNKQVCEPENPCKDKT
HNCHKYAECIYISHFSDPMYKCECRTGYAGDGFICGEDSDLDGWPNQNLVCGANDTYHCK
KDNCPSLPNSGQEDFDKDGQGDACDKDDDNDGILDERDNCPLLYNPRQFDFDKDEVGDRC
DNCPYEHNPAQIDTDHNGEGDACAIDIDGDEILNEADNCPYVYNTEQKDTDMDGVGDQCD
NCPLLHNPDQTDVDNDLVGDQCDNNQDIDEDGHQNNLDNCPYVANANQVDHDKDGKGDAC
DYDDDDDGIPDDKDNCRLTPNEDQMDSDGDGRGDACKDDFDNDSIPDILDVCPENNAISI
TDFRKFQMVHLDPKGTTQIDPNWVVRHQGKELVQTANSDPGLAIGFDEFSAVDFSGTMYV
NTDRDDDYAGFVFGYQSSGRFYVVMWKQITQTYWEDKPSKAFGISGVSLKVVNSTTGTGE
NLRNALWHTGNTAGQVRTLWHDPKNIGWKDYTAYRWHLIHRPKTGFIRVVVYEGKQIMAD
SGPVYDKTFAGGRLGLFVFSQELVFFSDLKYDCRDKSEWPTVFIR
NT seq
3558 nt
NT seq
+upstream
nt +downstream
nt
atgatactcaggaggtgtctcttcttgctgctcttatcatttaatttcctccacgcttta
cctcaagatggtgagcaggaggatgagaccttattcgacttgtttgaaatcacccacatt
tctcgcaagaccctgggggccaaacagtttcggggccaagactcagaagccccagctttc
cgctttatccgcttcgaccacctgcccccagtgagcacccccatactaaaacaaatacta
cgtcagattcaaaacaatgagggctttgtgtttgtggccagcatccgccaggaccgcgcc
tcaaggggcaccctgattggtttggagacctctgatggcaggcggcagtttgagattgtg
tccaacggacgtgccaacactctggacctggtgtactgggtggacggctcccagaacgtg
gtttcgtttgaggatgtggacctttctgactcacagtggaagaatatcacacttcatgtt
catggggaaaatgcaaacctgtttgttggctgcagcctggtagacagcttcatcctggat
gagcctttctacgagcacctgcaggctgagggaagcctcatgtatgttgccaagggatcc
acccgggagaaccacttcaggggcctcctgcagaatgtgcgttttatctttgacaccaca
gtggaagacatcctgctgagcagagactgcgaggtcctcaaacaagatgatgccaatatt
gtgagcgagagcagagaaattgtagatgtgagtccttccatcaccacaaacattatcggt
cagaagacagacgatgtgggctcagatatgtgcgagcgctcctgcgaggaacttagcacc
atgttccaggagctcaatggcctgcgtgttgtcgtcagcaaccttattgatggcttgcaa
aaagtgacagaggagaacacagtcatgaaggaggcccttgggaagatgaagaagccaaaa
gagaaaaacatgtgctggcaggatggccgcctcttcgatgataaggaagactgggttgta
gacagctgcaccaaatgcacctgccaggagtccaagattgtgtgtcaccaaatcacatgc
cccccagtggcctgtgccagcccgtcatttatcgacggagagtgctgcccagtgtgtttg
ccgatagacagtgaggatggctggtctccctggtcagagtggacggagtgcacagtcacc
tgcgggacaggaactcaacagaggggtcggtcatgtgatgcaaccagcaacccctgcagc
ggatcttctattcagacccgcaagtgtagcctgagcagatgcgacagccgtgttcgtcag
gacggagggtggagtttgtggtccccatggtcgtcctgctcagtgacctgtggagaagga
cagatcaccaggatacgacactgcaatgctcccatgccacaactggggggtacagagtgt
gaggggaatgggagagagactcagcgctgcactgcagagccctgtccaattgatggtggt
tggggtccttggtctccatgggcaacctgttcttcaacatgcggaggagggatcaaaagt
cgggcgcgtgtgtgcaatagtcctcaacctcagtatggtggcaagaaatgtatcggggag
gctgaggacagtgacagctgtaacaaaaaaacctgtcctgttgatggctgtctgtctaat
ccttgttttgggggagtggattgcaacagctctccagatggatcctgggagtgtggccca
tgccctgctggtttccgtggaaatggtacccactgtgaagatatcaatgaatgcgacatg
gtctctgatgtttgttacaaagggagtggagtgcagcgctgcgtcaacaccaacccaggg
tttcactgcctgccctgtccgaagcgctacaagggcacccagcctttcggtatgggtgtg
gaggctgcaaagaagaacaaacaagtgtgtgagccagagaacccatgcaaggacaaaacc
cacaactgtcacaaatatgccgaatgcatctacatcagccacttcagtgaccctatgtac
aagtgtgagtgcaggactggttacgctggagacggctttatttgtggagaagactcagat
ttggatggctggcccaatcagaaccttgtgtgtggtgccaacgacacctatcactgcaag
aaggataactgccctagccttcccaactctggacaagaagactttgacaaagacggtcaa
ggagatgcttgtgacaaggatgacgacaatgatggaattctcgacgaaagggacaactgc
cccttactttacaatcctcgccagtttgactttgacaaggatgaagttggcgaccgctgc
gacaattgtccttatgagcacaaccctgctcaaatagacaccgaccacaacggagaaggg
gacgcctgcgcaatagacattgatggagatgaaattctgaatgaggccgacaactgtccc
tatgtgtacaacactgaacagaaggacactgacatggatggagttggtgaccagtgtgac
aactgtccattgttacacaaccccgaccagactgacgtggacaatgacttggttggagat
cagtgtgacaataaccaggacatcgatgaggacggccatcagaacaacctggacaactgt
ccctatgtggccaacgccaaccaggtggaccatgacaaggacggcaaaggagacgcatgt
gactatgatgatgatgatgatggtatacctgacgacaaggacaactgcagactgacaccc
aacgaagaccagatggactctgatggcgatgggagaggagatgcctgcaaagacgacttt
gacaacgacagtattccagatattcttgacgtgtgtccggagaacaatgccatcagcatc
acagacttcagaaagttccagatggtccacttggatcctaagggaaccactcaaatcgat
cccaactgggtggtcagacatcagggcaaagagctggtccagactgccaactctgatcca
ggcctcgcaatcggttttgatgagttcagtgctgtggacttcagcggaacgatgtacgtg
aacacggacagagatgatgactatgcaggttttgtgttcggctaccagtcgagtgggcgc
ttctatgtcgtgatgtggaagcagatcacgcagacttactgggaggacaagccctcgaag
gccttcggcatctccggtgtttcactcaaagtggtcaactccaccactggcacaggagaa
aacctcaggaatgctttgtggcacacgggcaacactgctggacaggtgcggactctgtgg
catgaccccaaaaacattggctggaaggattacaccgcctacaggtggcatctcatccac
aggccaaagactggttttataagggttgtggtctatgaaggtaaacagatcatggctgac
tcaggaccagtttatgacaagacgtttgccggaggaaggttaggcttgtttgtcttctca
caagaactggtgttcttctccgacctcaagtatgattgcagagataagtcggagtggcca
acagtgttcataagataa
DBGET
integrated database retrieval system
