Trueperella bernardiae: QPC17_00985
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Entry
QPC17_00985 CDS
T09150
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
tber
Trueperella bernardiae
Pathway
tber03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
tber00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
QPC17_00985 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tber03400
]
QPC17_00985 (mfd)
Enzymes [BR:
tber01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
QPC17_00985 (mfd)
DNA repair and recombination proteins [BR:
tber03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
QPC17_00985 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
RecG_dom3_C
MFD_D3
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
WIM08143
LinkDB
All DBs
Position
213019..216534
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AA seq
1171 aa
AA seq
DB search
MDLRPVLSILADQDTLSSRANSRFADFGMPRGAFAPAIAELLASGDGRLQVAVTASGREA
EDLRDALRAYVPAEKMAIFPAWETLPHERLSPRSDTVAERLTTLRRLAHPEDFPELRVLL
VPIRAFLQPIAAGLGELAPVRLAVGDVVDFDDLQERLVAAAYERVDMIEVRGQFAVRGGI
IDVFPPTSDSPLRIEFFGDEVDEIRSFAVADQRSLDDVGHLYAPPCREMLLNDDVRSRAA
QALTELPGAVDMLDRIANGIAVEGMESLQPVLVEQMHPFVDELPATARIIMIEPERIEAR
AQSLQETTEEFLAAAWSSAAAGGEIPISVSKASFLEIPDVRAHARELGLGWWRLGGFAGE
DTVQLPLREPRNFAGDVDAALRELGHKARQQWRIVVAVEGAGLGRRLVEQLSDADVPARF
SEDLGEVRPGVVEIVTAPVQSGFIADAEKFALLGASELIGRKRSRSAQQRQMPKRRKNAV
DPLQLKPGDYVVHARHGVAQFVQLAKRKLGGPNGTQREYVVLEYAPSKRGQARDQLWVPT
DQLDQISKYAGGDAPTLNKMGGADWEKTKSKARAAVKQIAKELVRLYAQRRATKGHAFAP
DTPWQHELEDAFEFVETPDQLSTIEEVKRDMEAPEPMDRLISGDVGYGKTEIAVRAAFKA
VQDGKQVAVLAPTTLLVQQHLETFQERYAGFPVKVAGLSRFQTDKESEDVKDGVRRGEID
VMIGTHRLITGDVRFKDLGLVIIDEEQRFGVEHKETLKQMYPTVDVLSMSATPIPRTLEM
AVTGLRQMSTLATPPEERHPILTYVGAHEDQQIAAAIKRELLRDGQVFYVHNRTESINRV
ATHLSELVPDARIGVAHGKMSENQLEAVIQEFWDKDIDVLVCTTIVETGLDISNANTLIV
ENAHKLGLSQLHQLRGRVGRGRERAYAYFLYPRDGSMTETAIERLRTIAAHTELGAGFQV
ALKDLEIRGAGNLLGGEQSGHIAGVGFDLYIRMVSEAVAGMTGRDTRTEAEKAAETRIEL
PVDAYVPESWVTSERLRLEIYTKIAASTTEAQRADIHQELVDRYGSVPVEVERLFTLAQL
REKVRSVGIEEIVMQGNNVRFAPVVLPDSRHARLRRLYPKAIAKPAIRTLLVPLPVENER
RLGAAKVIEGDAVVQFVEQVVDSVMLASIGS
NT seq
3516 nt
NT seq
+upstream
nt +downstream
nt
atggatctgcgccccgttctttcaatcctcgccgaccaggacacgctgtcctcgcgcgcg
aactcccgcttcgccgacttcggtatgccgcgtggcgccttcgccccagcgatcgctgag
ctcctggcctcgggggacggtcggctacaggtggcggtgacggcgtcgggacgcgaagcc
gaggacctgcgcgacgccctgcgcgcctacgtcccggccgagaagatggcgattttcccc
gcgtgggaaaccctcccgcacgagcgcctttcgccccgctcggacacggtggccgagcgc
ctgaccaccctgcgccgccttgctcaccccgaagacttccccgagctgcgcgtgctactc
gtgccgatccgtgccttcctccagccgatcgcggctgggctgggcgaactggcgccggtg
cggctggccgtgggcgacgtcgtcgacttcgatgacctgcaagaacgcctggtcgctgcc
gcctacgagcgggtggacatgatcgaggtgcgcgggcagttcgccgtgcgcggcgggatc
atcgacgtctttccgcccacctccgactccccgttgcgaatcgaattcttcggcgatgag
gtggacgagatccgctccttcgccgtagccgaccagcgttcactggacgacgtcgggcac
ctgtacgccccgccgtgccgggaaatgctgctcaacgacgacgttcgctcgcgtgccgcc
caggccctcacggagctgccgggcgcggtggacatgctcgacaggatcgcgaacgggatc
gcggtggagggcatggagtcgctacagccggtgctggtggagcagatgcacccgttcgtc
gacgagctgcccgccaccgcgcggatcatcatgattgagccggagcggatcgaggcccgc
gcgcagtcccttcaggagaccacggaggagttcctggcggcggcgtggtcctcggcggcg
gccggcggcgagatcccgatctcggtatcgaaggcgtccttccttgagatcccggacgtg
cgcgcccatgcgcgcgagctcggcctgggctggtggaggctcggcgggttcgcaggcgag
gacaccgttcagctgcccctgcgcgagccacgcaacttcgccggcgacgtcgacgccgcc
cttcgcgagctcggccacaaggcccgccagcagtggcggatcgttgtggcggtcgagggc
gcgggtttggggcgccgcctggtcgaacagctttccgacgccgacgtgcccgcccgcttc
tccgaggacctgggcgaggtgcggcccggggtcgtcgagatcgttaccgcgcccgtccag
tccgggttcatcgccgacgccgaaaagttcgccctgctgggtgcgagtgagctcatcggg
cgcaagcgctcgaggtcggcccaacagcggcagatgccgaagcggcgcaagaacgctgtc
gaccctctgcagctcaagccgggcgactacgtggtgcacgcgcgccacggcgtcgcgcaa
ttcgtccagctcgccaagcgcaaactgggcgggccgaacgggacacagcgcgaatacgtg
gtgcttgaatacgcgccgtccaagcgcgggcaggcacgcgaccagctgtgggtgcctacc
gaccagctcgaccagatctcgaagtacgccggcggcgacgcgcccaccctcaacaagatg
ggcggggctgactgggaaaagacgaagtcaaaggcgcgggccgcggtcaagcagatcgcg
aaggagctcgtgcggctctacgcccagcgacgggccaccaaaggccacgccttcgccccc
gacaccccgtggcaacacgagctggaggacgccttcgaatttgtggagacgccggaccag
ctctccaccatcgaagaggtcaagcgcgacatggaggcacccgagccgatggaccgcctc
atctccggcgacgtcggctacggcaagaccgagatcgccgtccgggccgcgttcaaggcc
gtgcaggacggtaagcaggtggcggtcctcgcgcccaccaccctgcttgtgcagcagcac
ctcgagaccttccaggagcgctacgccggatttcccgtcaaagtggcgggcctgtcacgt
ttccagacggacaaggagtcggaggacgtcaaggacggggtgcgacgcggggagatcgac
gtcatgatcggaacccaccgcctcatcaccggcgacgtgcggttcaaagacctggggctc
gtgatcatcgacgaggagcagcgcttcggtgtcgagcacaaggagaccctcaagcagatg
taccccacggtggacgtgctgtcgatgtcggccaccccgatcccgcgtacgctcgaaatg
gcggtgacggggctgaggcagatgtccacgcttgccaccccgcccgaggagcgccacccc
attctcacgtatgtgggcgcgcacgaggaccagcagatcgcggcggccatcaaacgcgag
ctcctgcgcgacgggcaggtcttctacgtccacaaccgtaccgaatccatcaaccgggtg
gcgacccacctgtccgaactggtgcccgacgcgcggatcggcgtcgcgcacggaaaaatg
agcgagaaccaactcgaggccgtgatccaagagttttgggacaaggacatcgacgtgctc
gtgtgtaccacgatcgtggaaaccgggctcgacatctcgaacgccaacacgctgatcgtg
gaaaatgcccacaagctcgggctttcgcagctccaccagttgcgcgggcgtgtggggcgc
gggcgcgagcgcgcatacgcctacttcctctacccgcgagacgggtccatgaccgagacc
gcgatcgagcggctgcgcaccatcgccgctcacaccgagctcggcgccggcttccaggtg
gcgctcaaggacctggagatccgcggcgccggcaacctgctgggcggggagcagtccgga
cacatcgccggggttggctttgacctgtacatccgcatggtttccgaggccgtggcgggg
atgaccgggcgcgacacccgcaccgaggcagagaaggccgccgaaacccgcatcgagttg
ccggtggacgcctacgtgcccgaatcgtgggtgacgtccgagcggctgcggctggagatc
tacacgaagatcgccgcgtcgacgaccgaggcgcaacgggccgacatccaccaggaactc
gtggaccggtacggctccgtgcccgtggaggtggagcggctcttcacgctggcccagctg
agggagaaggtgcggtccgtggggatcgaggagatcgtcatgcagggcaataacgtgcgc
ttcgcgcccgtggtgctacccgattcgcgccacgcgcggctgcgccgtctctacccgaag
gcgatcgccaagcccgccatccggacgctacttgtgcccctgcccgtggagaacgagcgg
cggcttggcgcggcaaaggtcatcgagggcgacgccgtggtgcaattcgtggagcaggtg
gtcgactcggtgatgctggcgagcatcggcagttag
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