Trypanosoma brucei gambiense: TbgDal_V5020
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Entry
TbgDal_V5020 CDS
T06526
Name
(RefSeq) ATP-dependent DEAD/H RNA helicase, putative
KO
K12811
ATP-dependent RNA helicase DDX46/PRP5 [EC:
5.6.2.7
]
Organism
tbg
Trypanosoma brucei gambiense
Pathway
tbg03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tbg00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
TbgDal_V5020
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tbg03041
]
TbgDal_V5020
Enzymes [BR:
tbg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
TbgDal_V5020
Spliceosome [BR:
tbg03041
]
Complex A
U2 snRNP components
U2 related factors
TbgDal_V5020
Complex B
TbgDal_V5020
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
SecA_DEAD
Motif
Other DBs
NCBI-GeneID:
23861516
NCBI-ProteinID:
XP_011773649
UniProt:
C9ZPN4
LinkDB
All DBs
Position
5:1071074..1073920
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AA seq
948 aa
AA seq
DB search
MPKREREDSKDSCSGDTSCSTDSSTSDSSSSCSIFSSSSGSAKRRSKKASFEVHKIDNGN
SGDTTSKSNTSPRPNDGAVKLDVSAALRAELQPKLTETLGDHALEPVYGIKDENNGNSGR
TGYEDGGGMQHEGYGNMSSDNDSPDDRFGTSASTSSTDADDEAVEDFRERLLAHAQVTSA
AKKEHSTSIESEGLLGSGLNPARALEHLRKALLKPVSSTALAVVSATDESHDLMDAVVSA
KLPPPPADDVKRLRKLHYVDHSTIEYPPIQKEFYVSPPDVRGLDAGELKELLKELDGAKV
RGRDPPRPMRSWTGSGLADSVLEALAEGGFQQPFAVQSLGAPVLMSGRDLLVVAKTGSGK
TLSYLLPLIRHCMGQRACKKGEGPITLVLVPTHELGCQIVRVAEKLCSAAHLRLVASYGL
VPLSDNIKQCRAGCEVMVSTPGRLLDLLTVGGGGVLSLRFVSFVVVDEADRMFDSGFAEH
VEAFLKNIRPDRQLAMFSATMPKELKKVICRHLHDPIEITVGGKPTPASNVEQRFFFFDE
ELYDVDVESRSEDKKFLKLLQILGEEGGNGEHLILIFTQQKKECDELFARLSACGYNKRI
AVLYSGMDPIDREFALEYFSPGNQFILIATGVAERGLDIPYLELVINYTLPDHYEAYVHR
IGRTGRAGRKGKAVSFFTRGKDDELAADLCEGLERAEQQVSEELYERATKVRELRKGGTA
RHNALFHRGYMRAKKQRFTNRDQKEQFKTALRAAGLEDDMPTGSDSDSGFSSGDDSDVGV
KIKAVEEDNADDSCDAELSSALTIHKGDGALTVSSAQLQKQKESLEAALAYARKTTEMAV
NPASRNVRFEAEYPINDLPNVVRLRLQNSAVLRSVAEESNSTIVRKGVFYDKSLKHSHRL
RDGVRPLYLLIIGKTAESVRDTVKKLNSVKEEAQSRLQQKVSSVGAQL
NT seq
2847 nt
NT seq
+upstream
nt +downstream
nt
atgcctaaacgtgaaagggaagacagtaaggacagctgcagcggtgatactagttgctca
accgatagcagcacgagtgactcgagctcttcatgttcgattttctcttcttctagcggc
agtgcgaaaagaagaagcaaaaaggcgtcttttgaagtccataagatcgacaacggcaac
agcggcgacactactagtaaaagcaacacatctcctagaccaaatgatggtgcggtcaag
ttggatgttagtgcagcgctgcgtgcggagctgcaacccaaactcactgaaacgctgggg
gatcatgcgttagagcccgtatatggtatcaaagatgagaataatggtaacagtggccgt
actggatacgaggacggtggtggcatgcaacatgaaggatacggtaatatgtcaagcgat
aatgactctcctgatgacaggttcggaacatccgcatccacttcgagtaccgacgctgat
gacgaagccgttgaagacttccgggagagacttttggcgcacgcgcaggtgaccagtgcg
gccaaaaaagagcacagcacatcaattgaaagtgaaggtctgctaggtagcggactaaat
cccgcccgagcactggaacacttgcgaaaggcattgctcaagccagtttcttccacggca
ctcgcagttgtaagcgccactgatgaatcccatgacctcatggatgccgtggtttcagcg
aaactcccacctccacctgccgatgacgtaaaacggttgaggaaacttcattatgtggac
catagcactattgaatatccaccaatacagaaagagttttatgtttctccacctgatgtg
aggggcctcgacgcaggggagctaaaagagttgctgaaagaacttgacggtgccaaggta
cgtggtcgtgatccaccacgaccgatgcgtagttggacgggatccggtctcgcggactct
gtacttgaggcgctcgcggaagggggatttcagcaaccatttgctgtgcaatcgttaggt
gctcctgttcttatgagtggccgtgacctgcttgttgtcgccaaaacgggatccggaaaa
acgctgtcgtatctgctcccactcatccggcattgcatgggtcagagagcatgtaaaaag
ggagagggcccaatcacccttgttttggttcctacgcacgaacttggttgccagattgtg
agggttgcggagaagctctgctctgcagctcacctacggctcgttgcttcgtacggattg
gttcccctttctgataacataaagcagtgtcgtgcgggttgcgaggtgatggtctcaaca
ccgggtcgcctactcgatcttcttacagttggtggcgggggtgtgctttccctcaggttt
gtttctttcgttgttgtggatgaggccgatcgcatgtttgatagtggttttgcagagcat
gtggaagcttttttgaagaatatccgtccggaccgtcaactggcgatgtttagcgccacc
atgccgaaagaactgaaaaaggtaatttgtcgccatttgcatgacccaatagaaattacg
gtgggtggaaaaccaacgccggcttctaatgtggagcagcgtttctttttcttcgacgaa
gaactttacgatgtggacgtggaaagccgcagtgaagacaaaaagtttttgaagcttttg
caaattcttggtgaggagggtggaaacggagaacatcttattcttatatttacacagcag
aaaaaggaatgtgatgaactattcgcgcgactctccgcctgtggttacaacaagcgcatt
gccgtattatacagtggcatggatcccatcgatcgtgagtttgctctcgagtacttttct
cctggtaatcagttcattctgatagcaacgggtgtagctgagcgtggactggacatacct
taccttgaactagtcattaactacacccttccagaccattatgaggcttatgttcaccgg
atcggtcgcacaggtagagcagggaggaaaggtaaggctgtcagtttcttcacacgagga
aaagatgatgaactggcggctgacctctgtgaaggtcttgagcgggcagaacaacaggta
tcggaagaactctacgagcgggctacaaaggtgcgtgagttacgcaagggtggaactgca
cgacacaatgctctctttcaccgtggttatatgcgggcgaaaaagcagcggttcaccaac
cgtgaccaaaaggagcagttcaaaacggcactgcgtgcggcaggattggaggacgatatg
ccaacggggtcggattcggactccggtttcagtagtggtgatgatagcgatgtgggtgtt
aagattaaggctgtcgaagaggacaacgctgacgacagttgcgacgccgaactttccagt
gcactgaccatccataaaggtgatggtgcactcaccgtcagctccgctcaactgcaaaag
cagaaagagtcgttggaggcggcgttggcgtacgccagaaagacaacggagatggccgtt
aatccagcatcgaggaacgtgcgctttgaggcagaatatcctatcaatgacctgccaaat
gttgtgcgtttgcgactgcagaactcggcagtgctgcggtcggtggcggaagaaagcaat
tcaacaatagtccgtaaaggtgtgttctatgataaaagtttaaagcactcgcatcgccta
cgcgacggtgttcggccactttatcttttgattataggcaaaactgctgaatctgtgcgg
gacacagtgaagaagcttaatagcgtcaaggaagaggctcaaagtcgtcttcagcaaaaa
gtgtcgtcggttggggcacagctttag
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