KEGG   Trypanosoma brucei gambiense: TbgDal_VI4610
Entry
TbgDal_VI4610     CDS       T06526                                 
Name
(RefSeq) DNA ligase I, putative
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
tbg  Trypanosoma brucei gambiense
Pathway
tbg03030  DNA replication
tbg03410  Base excision repair
tbg03420  Nucleotide excision repair
tbg03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:tbg00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    TbgDal_VI4610
   03410 Base excision repair
    TbgDal_VI4610
   03420 Nucleotide excision repair
    TbgDal_VI4610
   03430 Mismatch repair
    TbgDal_VI4610
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:tbg03032]
    TbgDal_VI4610
   03400 DNA repair and recombination proteins [BR:tbg03400]
    TbgDal_VI4610
Enzymes [BR:tbg01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     TbgDal_VI4610
    6.5.1.6  DNA ligase (ATP or NAD+)
     TbgDal_VI4610
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     TbgDal_VI4610
DNA replication proteins [BR:tbg03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    TbgDal_VI4610
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     TbgDal_VI4610
DNA repair and recombination proteins [BR:tbg03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     TbgDal_VI4610
   NER (nucleotide excision repair)
    Other NER factors
     TbgDal_VI4610
   MMR (mismatch excision repair)
    Other MMR factors
     TbgDal_VI4610
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C
Other DBs
NCBI-GeneID: 23862129
NCBI-ProteinID: XP_011774268
UniProt: C9ZRF3
LinkDB
Position
6:1094475..1096715
AA seq 746 aa
MMIMSRATESILLSYFFFFKLFSTSLCLLFSINAGVVPPLPQCRHLTMVSGPTATAVVQH
KRIREDEDDIFDGERDDEMSAGCVNMAKIFLRTPPDPYGGCHASVWPRPQENQKQGPDTV
PYAAVADTLADISAESSRLECIRLLSNFLVAVIQRNPIDLVPVVYLVINKQGPAHEGIEL
GVGDALLLKVVAECCGITEARAKEEYRQTGDLAEVAQSKKRIQSTLVKPKRLTALAVFQA
LREIALMSGKDVARRRGDVIKRLLRDAVGPEVNLIVRALQQKMRVGLAETSVLAAVGYAF
AMSNIGVAKIPSLTPEQLQRELNVGAANLTRTYNEVPCLDVVLAAVLQHGLEVIVPTSAE
ANMHARALSVRPGIPVKPQLAHPTSGVSVILDRFNGKAFTSEYKYDGERAQIHYTRGSGV
QIFSRNSETNTSKYPDIISMLPEAFSVDTVDSFIIDAEVVAVDKVTGALQAFQVLQHRGR
KNVSFDNVKVPVCVFAFDILYFNGEPQMSKTLSQRREVLHTHFKPVSTKFRFAEYLDSND
VDDIQAFLDRAIRDGTEGLMVKTLEEESTYVPAKRSHYWLKLKKDYMDGVTDTLDLVPIG
AYYGKGKRTGVFGGFLLACYDGEGDEYQSICKIGTGFQDDQLEAITKSLQPSILDEQPRY
YRTEDKPDVWFQASQVWEVKAADLSISPAHFAAYGLVDASKGIALRFPRFIRVREDKKVH
EATSAAQVAEMYHNQSLAQRGVGDME
NT seq 2241 nt   +upstreamnt  +downstreamnt
atgatgatcatgtcgcgagccacagagtccattttgttgtcctatttctttttttttaaa
ttattttctacatctttatgcctcttattttcaatcaatgccggggtagtccctcccctc
ccacagtgcaggcacttaacaatggtaagtggacctacagctactgcggttgtgcaacat
aagcggattcgtgaggatgaagatgacattttcgatggggagcgggatgatgaaatgtca
gccggttgtgttaatatggcaaagatatttttacgtacaccaccggatccatacggcggc
tgtcatgcatcggtatggcctcgacctcaagagaaccaaaagcaggggccggacactgtt
ccttatgccgctgttgcggatactcttgcggatattagcgcggagagttcaaggttggag
tgcattcgactcctttcaaactttctcgtggctgtcatacaacgcaatccaatagatttg
gttcctgttgtttatctcgtaataaacaagcaagggccagcccatgaggggatagaactt
ggtgtcggcgatgctctgctactgaaagttgttgcggaatgttgtggcataacagaagca
cgtgcgaaggaggaatatagacaaactggcgacttggccgaggtggcacagagcaaaaag
cgcatacaatccacccttgtgaaacccaagcgcttgactgcactagcagtgtttcaggcg
ttgcgtgaaattgccctcatgagtgggaaagatgtggcacgacgccgtggtgacgtaata
aagaggctccttcgtgatgccgtgggtcccgaggtcaacttgattgttcgagctttgcag
cagaagatgcgtgtggggctagcggagacttctgttcttgcagctgtcggttacgccttt
gctatgagcaacattggcgttgcaaaaataccatctcttaccccagaacagctgcaaagg
gaattaaacgttggtgcggctaatctcactcgtacatacaatgaagttccctgtcttgac
gttgttttggctgctgtgttgcagcacggccttgaagtgattgttccgacgtctgcggaa
gcgaatatgcatgcgcgtgccctctccgttcgccccggtattccagtgaaaccgcaactt
gcccacccaaccagcggtgtaagtgttattttggatcgatttaatggcaaagcattcacc
tctgaatacaagtatgatggtgagcgggctcaaattcactatacgaggggtagtggagtt
cagatcttttcacgcaactctgaaacaaacacgagcaagtaccccgatattatatctatg
cttcctgaagcgttttcggttgacaccgttgattctttcataattgatgctgaagtggtg
gcggtggacaaggtgactggtgctttacaggcttttcaggtgctacaacatcggggacgg
aaaaacgtttcgtttgacaacgttaaggttcccgtatgcgtgttcgcttttgacattttg
tacttcaatggtgaaccacagatgtcgaagacgctttcccagcgcagagaagtgctccac
acccattttaaaccagtttccacgaagtttcggtttgccgagtacctggacagcaatgat
gtggatgacattcaggccttcctggatcgcgccataagagatgggacggagggacttatg
gtgaagacgctcgaagaggagtcgacgtatgtgccagcaaaacgttcgcactactggctg
aaactcaaaaaagattatatggatggtgttaccgatacgcttgacctcgttcccattggt
gcatactacgggaaagggaaacgcaccggtgtttttggtggatttcttctcgcatgctac
gacggtgagggtgacgagtatcagagtatatgcaagattggaactgggtttcaggatgat
cagcttgaggccatcaccaaatcactccaaccatctatattggatgaacaaccgcgctac
taccgcactgaagataagccggatgtgtggtttcaggcatcgcaagtgtgggaagtgaag
gctgctgatctttctatatcccctgcccatttcgctgcatatgggttagtagatgcttca
aagggaattgcactgcggtttccgcggtttattcgcgtgcgtgaggacaagaaggtgcat
gaggccacatcggctgcacaggttgcagagatgtaccacaatcaatcgctcgctcaaagg
ggtgtgggcgatatggagtaa

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