Trypanosoma brucei gambiense: TbgDal_X2000
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Entry
TbgDal_X2000 CDS
T06526
Name
(RefSeq) histone deacetylase 1
KO
K06067
histone deacetylase 1/2 [EC:
3.5.1.98
]
Organism
tbg
Trypanosoma brucei gambiense
Pathway
tbg03082
ATP-dependent chromatin remodeling
tbg03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
tbg00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
TbgDal_X2000
03083 Polycomb repressive complex
TbgDal_X2000
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
tbg03036
]
TbgDal_X2000
Enzymes [BR:
tbg01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
TbgDal_X2000
Chromosome and associated proteins [BR:
tbg03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class I HDACs
TbgDal_X2000
HDAC complexes
Sin3A-HDAC complex
TbgDal_X2000
BRAF-HDAC complex
TbgDal_X2000
REST complex
TbgDal_X2000
SHIP complex
TbgDal_X2000
MiDAC complex
TbgDal_X2000
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.6)
TbgDal_X2000
Heterochromatin formation proteins
Other heterochromatin formation proteins
TbgDal_X2000
Chromatin remodeling factors
NuRD complex
TbgDal_X2000
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hist_deacetyl
Motif
Other DBs
NCBI-GeneID:
23865255
NCBI-ProteinID:
XP_011777385
UniProt:
D0A1H7
LinkDB
All DBs
Position
10:402904..404070
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AA seq
388 aa
AA seq
DB search
MNEDGDCRRVALIDTSCYSADCTLSALVPQHAMKPYRLLVTMELIASLGLKRFCRTVVPP
PIGIKELLTYHAEDYVLNLGLHSNRSWLWNTEVSKVTFSGDCPPVEGIVEYSLSTVSGSL
MAAVLLNSGAVDTAIHWGGGMHHAKCGECSGFCYVNDIVIAIIELLKCHDRVLYVDLDMH
HGDGVDEAFCRSRRVFTLSLHKFGESFFPGTGHPRDVGIGNGRHYTMNLAMWDGVDDFYY
TTVFERALRSIVKRFNPNVVVLQCGADSLAGDRLGHFNLSSWGHGKCVEEVKKLGLPMLV
VGGGGYTLRNVAKLWAYETSILCGKRLPLNTVIPLHRMPLSGWLFEESPQLLVSQDEENK
PLPGVNVQRSFRVIIEQIDKHCPNIMTV
NT seq
1167 nt
NT seq
+upstream
nt +downstream
nt
atgaatgaggatggtgattgtcggcgcgtcgctctcattgacacatcttgctattccgct
gattgtacgctctcagcgttggttcctcagcatgcaatgaaaccgtatagacttttggtg
acaatggaactaattgcatcactggggttaaagcggttttgtcggacggttgtcccgcca
ccaattggtattaaagagctgcttacctaccatgctgaagattatgtactgaatctggga
cttcatagtaaccgcagctggttgtggaatacagaggtatcgaaggttaccttttccgga
gattgtccacctgttgagggaattgttgaatattctctctcaacagttagtggctccctc
atggccgctgttttgctgaatagtggtgctgtcgatacagcgattcattggggtggtggt
atgcatcatgcaaaatgcggtgagtgttctggattctgttacgtgaatgatattgttatc
gccattattgagctactgaaatgccatgatagagttttatatgttgatcttgatatgcat
cacggagacggagtcgacgaagcgttttgccgtagcagaagagtctttactctttccctt
cacaagtttggcgagtccttttttccgggtacaggccatccacgggatgtaggcattgga
aacgggcgccactacactatgaacttagccatgtgggatggtgtggatgacttctactac
accacagtttttgagcgtgcgctcagatccattgtaaaacggttcaatccaaatgtagtt
gtcttgcagtgtggagccgattcgctcgcaggagatcgtttgggacattttaatctctcg
tcatggggtcatggaaagtgtgttgaagaggtaaagaaattagggctaccaatgcttgtg
gttggtggtggtggttacaccctgcggaatgttgccaagctgtgggcatacgaaactagc
atactctgtgggaaaaggctccccttgaacactgtcattcctctacatcgaatgcctctt
agtggatggctcttcgaagaatcgccacaacttttagtttcacaggatgaagaaaacaaa
cctcttcctggtgttaacgttcaacgatccttccgcgtgattattgagcaaatagacaag
cactgtccaaatataatgactgtttga
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