Thiocapsa bogorovii: LT988_11540
Help
Entry
LT988_11540 CDS
T07840
Name
(GenBank) multidrug efflux RND transporter permease subunit
KO
K18138
multidrug efflux pump
Organism
tbog
Thiocapsa bogorovii
Pathway
tbog01501
beta-Lactam resistance
tbog01503
Cationic antimicrobial peptide (CAMP) resistance
Brite
KEGG Orthology (KO) [BR:
tbog00001
]
09160 Human Diseases
09175 Drug resistance: antimicrobial
01501 beta-Lactam resistance
LT988_11540
01503 Cationic antimicrobial peptide (CAMP) resistance
LT988_11540
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
tbog02000
]
LT988_11540
01504 Antimicrobial resistance genes [BR:
tbog01504
]
LT988_11540
Transporters [BR:
tbog02000
]
Other transporters
Electrochemical potential-driven transporters [TC:
2
]
LT988_11540
Antimicrobial resistance genes [BR:
tbog01504
]
Gene sets
Multipdrug resistance modules
Multidrug resistance, efflux pump MexAB-OprM [MD:
M00718
]
LT988_11540
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ACR_tran
SecD_SecF
Patched
Motif
Other DBs
NCBI-ProteinID:
UHD18617
LinkDB
All DBs
Position
complement(2543715..2546867)
Genome browser
AA seq
1050 aa
AA seq
DB search
MPLSKFFITRPKFAFVISIVISLAGALALMGLPVAQFPEITPPTVSVSTQYAGASADVVE
QTVAAPIEQEINGVEGMIYMSSKSDNDGRYSLTVTFDIGTDADMAQVKVQNRVSTAMPSL
PQEVQRQGVKTEKQSTNMLLIVNIFSPEQTFDSLYLNNYATINVKDTLGRVKGVGKAEIL
GVMDYGMRFWLKPDRMTALGVSVSDLQNAVAEQNVQVPAGQIGAPPAPTDQQFQYTVTTK
GRLSEVDEFANIIIRIEPDGSAIRVKDVARVELGAQAYSAAGRLDGQPSVVLAVYQTPDA
NALSVADQVKAALEDLSARFPDDMDYAILYDTTNFIEASIAEVKETLLIAIALVVLVVFI
FLGDWRSTLIPGIAIPVSLIGTFAFLAVAGFTLNTIVLFALILAIGIVVDDAIIVVENVQ
RIMDEEGLDPKAATAKAMDQVGGAVIATTLVLLAVFVPVGFMPGITGQLYQQFAVTISVA
VAISSVNALTLSPALCSVLLKPGQEPLKWLNWFNVLFGKLTNGYTAAVETTVRRATLMVL
LYAGLIAATVWMFINLPSGFLPEEDQGYFFIEVQLPDAASLTRTETALDRVEEQLREIPG
VTNVISVAGYSMLNSAFGSNSALVIPILAPWAERSEPGLRLPAIVARAQQIAADTADANV
IPFVPPAIPGLGSSGGFSFVLQDYSGGDIQEFASVMRGLIVAANEQPAVGSAFSTFRADV
PMLFLDVNRDKVQTLQVPMSELFATLQAQLGSTYINDFNKFGRTWRVLAQAEGDFRNTPS
DILRLFVRNKQGDMVPVATLAEVESQTGPQVVSRYNLFRSADISGGPAPGFSSGQAIAAM
EQTAEQTLPAGFGYEWTSMSYQEIQAAGQAPIIFGLALLFVYLFLVAQYESWSIPFAVLL
AVPVAVFGALATVGAAGLDVNLYTQIGLVMLIGLAAKNAILIVEFAKEQRENEGLSIYDA
AVKAARLRFRAVMMTALSFLLGIIPLVVATGAGAGSRVALGTAVFGGMLAATVIGTLLIP
VSYYVVQGVREKLNGAPREPLETNRVRDAS
NT seq
3153 nt
NT seq
+upstream
nt +downstream
nt
atgccgctgtccaaattcttcatcacccggcccaagttcgccttcgtcatctccatcgtc
atctcgctggccggcgcgttggcgctgatgggactgccggtggcgcagttcccggagatc
acgccgcccacggtcagcgtcagcacccagtatgccggcgccagcgccgacgtcgtggag
cagaccgtcgccgcgcccatcgaacaggagatcaacggcgtcgagggcatgatctacatg
tccagcaagtccgacaacgacggccgctacagcctcaccgtgaccttcgatatcggcacc
gatgccgacatggcgcaagtgaaggtgcaaaaccgcgtctccaccgcgatgccgtcgctg
ccccaagaggtgcagcgccaaggtgtgaagaccgagaagcagtccaccaatatgctgctg
atcgtcaacatcttctcgccggagcagacgttcgactcgctgtacctgaataactacgcc
accatcaacgtcaaggacacgctggggcgggtgaagggcgtcggcaaggccgagatcctg
ggcgtgatggactacggcatgcgcttctggctgaagccggaccgcatgaccgcgctcggt
gtcagcgtctccgacctgcagaacgccgtggccgagcagaacgtgcaggtgccggcggga
cagatcggcgcgccgccggcgccgacggaccagcagttccagtacaccgtcaccaccaag
ggccgactgtccgaggtggacgagttcgccaacatcattatccgtatcgagccagacggc
tcggcgatccgcgtcaaggacgtcgcccgcgtcgagctcggcgcccaggcctactcggcc
gcagggcggctcgacggtcagccgtcggtggtgctggcggtctaccagacaccggacgcg
aacgccctgtcggtggcggatcaggtcaaggccgcgctcgaggacctgtccgcacgcttt
ccggacgatatggactacgcgatcctctatgacacgaccaatttcatcgaggcgtcgatt
gccgaggtcaaggagacgctgttgatcgccatcgcgctggtggtgctggtggtgttcatc
ttcctcggcgattggcgctcgacgctgatccccggtatcgccatcccggtgtcgctgatc
ggcaccttcgccttcctggccgttgctggcttcacgctcaacaccatcgtgctgttcgcg
ctgatcctggccatcggtatcgtcgtcgacgacgccatcatcgtggtcgagaacgtccag
cgcatcatggacgaggagggactcgatcccaaggcagcgacggccaaggccatggatcag
gtcggcggcgcggtcatcgccaccacgctggtgctgctcgcggtgttcgtgccggtgggc
ttcatgcccggcatcaccggccagctctaccaacagttcgccgtcaccatctcggtggca
gtcgccatcagctccgtcaatgcgctgacgctgagcccggccttgtgctcggtgttgctc
aaacccggccaggagccgctcaaatggctcaactggttcaatgtcctgttcggcaaactg
accaacggctacacggccgcggtggaaacgaccgtgcgtcgggccacgctgatggtgctg
ctgtatgcgggattgatcgccgccacggtctggatgttcatcaacctgccgtccggcttc
ctgccggaagaggatcagggctatttcttcatcgaggtgcagttgccggacgcggcgtcg
ctgacccgcaccgagaccgcgctggaccgggtcgaggagcagttgcgcgagatcccgggc
gtgaccaatgtcatctcggtggctggctactcgatgctgaacagcgccttcggctccaac
agcgcgctggtgatcccgatcctggcgccttgggccgaacgctccgagccgggtctgcgc
ctgccggccatcgtcgcccgggcgcagcagatcgcggccgacaccgccgacgccaacgtg
atcccgttcgtgccgccggccatccccggtcttggcagctccggcggtttctcgttcgtg
ctgcaggactacagcggcggcgacatccaggagtttgcgtcggtcatgcgcggcctgatc
gtcgccgccaacgagcagcccgcggtcggctccgccttcagcaccttccgcgccgacgtg
ccgatgctgttcctggacgtgaaccgcgacaaggtgcagaccctgcaggtgccgatgagc
gagctgttcgcgacgctgcaggcccagctcggctcgacctacatcaacgacttcaacaaa
ttcggtcgcacctggcgcgtcctggcccaggccgagggcgacttccgcaacaccccgagc
gatattctgcggctgttcgtgcgcaacaagcagggcgacatggtgccggtagccaccctt
gctgaggtcgagtctcagaccggtccgcaggtggtgtcgcgctacaacctattccgctcc
gccgacatctccggcggcccggcgcccggtttcagctccggccaggccatcgccgccatg
gagcagaccgccgagcagacgctgccggcgggcttcggctacgagtggaccagcatgtcc
tatcaggagatccaggccgccggccaggcgccgatcatctttggtctggccctgctgttc
gtctacctgttcctggtggctcagtacgagagctggtcgattccgttcgcggtgctgctg
gcggtgccggtcgccgtgttcggtgcgctcgccacggtcggtgcggccggtctggatgtg
aatctctatacccagattggtctggtgatgctgatcgggctcgcggccaagaacgccatc
ctgatcgtcgagttcgccaaggaacagcgcgagaacgagggcttgagcatctacgacgcc
gcggtcaaggccgcgcgactgcgctttcgcgcggtgatgatgaccgcgttgtcgttcctg
ctcggcatcatcccgctggtggtcgccaccggtgccggcgccggctctcgggtcgcgctc
ggcaccgccgtgttcggtggcatgctcgcggccacggtcatcggaaccctgctgattccg
gttagctattatgtggtgcaaggggtacgggagaagctgaacggggcgccaagagaaccg
ctagagacgaaccgcgtccgagacgccagttga
DBGET
integrated database retrieval system
