Thiocapsa bogorovii: LT988_13725
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Entry
LT988_13725 CDS
T07840
Name
(GenBank) DEAD/DEAH box helicase
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
tbog
Thiocapsa bogorovii
Pathway
tbog03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tbog00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LT988_13725
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tbog03019
]
LT988_13725
Enzymes [BR:
tbog01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LT988_13725
Messenger RNA biogenesis [BR:
tbog03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LT988_13725
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Motif
Other DBs
NCBI-ProteinID:
UHD14364
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All DBs
Position
3032536..3034116
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AA seq
526 aa
AA seq
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MTDKHLTQTRFDSFALDQRILDGLDDAGFTRCTPIQEQTLPLALSGRDVAGQAQTGTGKT
AAFLIVLMQRLLTNPEPAPAKIARPRALILAPTRELAVQIHRDTELLAKHTGLRIAVVYG
GAGYQEQRDRVAGGVDILIGTPGRLIDYFKQKVFDLQAIEAVVLDEADRMFDLGFIKDIR
FLLRRMPPPEERQGLLFSATLSYRVTELAYEHMNHPQLVKIETETITADRVRQCCYMTSN
EEKIALLLGLVRGWDDARIMVFVNTKREADRVWGFLQGNGINTAVLSGDVPQKKRLKLLK
DFTDGKLPVLVGTDVAARGLHIPDVTHVVNYDLPEDPEDYVHRIGRTARAGAAGDAIGFV
CETYAFCLPDIEAFIGAKIPVEPVDPVLLAEVNPRSRMRPDREDRCEGRSTRSPRGAGGG
SGRGERRPRAGGQRRSPSQSPTQSLSREITPETPLAVTGQAPEVAALTDPSAITGVPVTD
RREAGAQRSETSTGEPKKRRRRRRSKKPSADGTNPPTPAPAPEPVD
NT seq
1581 nt
NT seq
+upstream
nt +downstream
nt
atgaccgacaaacacctcactcagacccgcttcgacagcttcgcgctcgatcaacggatc
cttgatggactcgacgacgcgggcttcacccgctgtacgccgatccaggaacaaaccctg
ccgctcgcgttgtcgggccgggacgttgccggtcaagcccaaaccggcaccgggaagact
gcggcctttctgatcgtgctcatgcaacgcctgctgaccaatcccgagcctgccccggca
aagatcgcacgtccgcgtgcgctgatcctcgccccgacccgtgagctcgcggtccagatc
catcgggatacggagcttctcgccaagcatacaggcctgcgcatcgcggtggtctacggc
ggagcgggttatcaggagcaacgcgaccgggttgccggtggcgtcgacatcctcatcggt
acacctgggcgcctgatcgactatttcaagcaaaaggtgttcgatttgcaggcgatcgag
gcggtcgttctcgacgaggccgaccgaatgttcgacctcggcttcatcaaggacatccgc
tttctgctccgacggatgccgccgcccgaggagcgtcagggcctcctcttctcggcgacg
ctctcctatcgcgtcaccgagctcgcctacgagcacatgaatcacccgcagctggtgaag
atcgagaccgagaccatcaccgccgatcgcgtgcgccaatgctgctacatgacctccaac
gaggagaagatcgccttgctcctgggcctggtccgcggctgggacgatgcgcgcatcatg
gtcttcgtcaacaccaagcgcgaggccgatcgtgtctggggtttccttcagggcaacggc
atcaataccgcggtgctctccggagacgtgcctcagaagaaacgcctgaagctcctgaag
gacttcaccgatggcaagctccccgtgctggtcggcacggacgtggccgcgcgcgggcta
cacatcccggacgtcacccatgtcgtgaactacgacctgccagaggatccggaggactat
gtccaccgcatcgggcggaccgcgcgggccggtgccgcgggcgatgcaatcggcttcgtc
tgcgagacctatgccttttgcctgccggatatcgaggcgttcatcggcgcgaagatcccg
gtcgagccggtcgatccggtactgctcgccgaggtgaatccgcgcagtcggatgcgcccg
gaccgagaggatcggtgcgaggggcggtcgacgcgctcgccccgtggcgccggtggcggt
agcgggcgcggcgagcgtcgtccgcgcgcaggcgggcaacgtcgttcgccatcacaatcg
ccgacgcagtcgctgtcgcgtgagatcacacccgagacacctttagccgtaaccggtcaa
gcgcccgaggtcgctgcgcttacggatccgtcggcgatcaccggcgtgccggtaaccgat
cgccgggaggcgggtgcgcagcgctcggagacctcgaccggtgagccgaagaagcgacgt
cggcgtcggcggtccaagaaaccgagcgccgacggcacgaatccaccgacgcctgctccg
gcgcccgagccggtcgattga
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