Thiocapsa bogorovii: LT988_17235
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Entry
LT988_17235 CDS
T07840
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
tbog
Thiocapsa bogorovii
Pathway
tbog03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
tbog00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
LT988_17235 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tbog03400
]
LT988_17235 (mfd)
Enzymes [BR:
tbog01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LT988_17235 (mfd)
DNA repair and recombination proteins [BR:
tbog03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
LT988_17235 (mfd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
MFD_D3
CarD_TRCF_RID
ResIII
UB2H
RecG_dom3_C
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
UHD15014
LinkDB
All DBs
Position
complement(3858989..3862471)
Genome browser
AA seq
1160 aa
AA seq
DB search
MHPVALKKMPSPLGPPLPGRPGERLLWGRLYGASVALAIAEAARAHEGLILAVVPDVQAA
AHLRAELGFFLAGSGLALLGFPDWETLPYDVFSPLPELVSERLLTLHRLPGLEKGVLVVP
VGTLMQRLPPREYVDRQSLVLAVGDRLDLDATRRRLERAGYSCVSQVIGHGEYAVRGSLL
DVFPMGSEVPLRIDLFDQEIETIRTFDPETQRSQEKLEQVRMLPAREFPLTEEAISGFRQ
RYRASFEGDPQSSLVYREVSEGRTPAGLEYYLPLFFEATATLFDYLPAGVLALESDACRE
TATTFIAGVAQRYEQRRHDIERPLLAPAKLYLHPDEMAGALNRLSGVLYQSHEVTDRRKG
YAAFHNFATSTLPPLAIQARAAHPAQALQDFLSAPERRVLFVAESTGRREMLAEHLAGFN
IRARQVDGWQAFIDGDLDLALTVAPLERGLVLEDRGIALVTETQLYGERVRQERRRRARE
RDSDAIVRNLTELTEGAPVVHEEHGVGRYLGLQTLQVGGMTTEFLALEYANGDKLYVPVS
SLHLISRYTGASPENAPLHRLGGEQWDRIKRKAAQKAHDVAAELLDIYARRAAREGVACP
APGDDYAAFAAAFPFEETPDQLRAIEGVIADMEDARPMDRVVCGDVGFGKTEVAMRAAFM
AVQGGRQVAVLVPTTLLAQQHFENFSDRFADWPIKIESLSRFRTAKEQKKVLEGLADGTV
DILVGTHKLLQPTLKFKNLGLAIIDEEHRFGVRHKEQLKNLRSEVDVLTLTATPIPRTLN
MAMSGLRDLSIIATPPVERHPIKTFVSPWSDSLIQEAVLRELKRGGQVYFLHNEVETIEN
QAQKLEALIPEARVQVAHGQMRERDLERVMRDFYHQRFNLLVCTTIVESGIDVPSANTIV
INRADKLGLAQLHQLRGRVGRSHHRAYAYLITPPTKAMTADAKKRLEAIESMEDLGAGFT
LATHDLEIRGAGELLGDEQSGQIHEVGFSLYMDLLERAVQALKAGRTPELDRPLSHGAEI
DLGLPALLPSDYLPDVHARLVMYKRIASAATTGDLRELQVEMIDRFGLLPEPAKNLLEIT
ELKLKVQPYGIRKIEAGPASGRILFDETPSIDPGNLIRLIQQRPKEFKLDGSDKLRFYRD
MAEPQRRLQEVNAVLRQLMG
NT seq
3483 nt
NT seq
+upstream
nt +downstream
nt
atgcacccggtggccctgaagaagatgccgtctccgctcggtccgccgctgcccggtcga
cccggcgaacgcctactgtgggggcgactgtacggcgcaagcgtcgcgctcgcgatcgcg
gaggccgcccgcgcgcatgagggactcatcctggctgtcgtgccggatgttcaagccgcc
gcgcatcttcgcgccgagctcggattctttctggcagggagcgggcttgcgctgctgggc
tttccggactgggagacactgccctacgacgtcttctccccgcttccggagctggtctcg
gagcggctgttgacgctgcaccgcttgccggggctcgagaaaggtgtcttggtcgtcccg
gtcggcaccctgatgcaacgcttgccgccgcgcgagtacgtggacaggcagtccctggtg
ctcgcggtcggggatcggctggacctggacgcgacccgtcgccgcctggagcgtgccggc
tattcctgcgtctcccaggtcatcggtcacggcgagtatgcggtgcgcgggtcgctgctg
gacgtcttcccgatgggcagcgaggtcccgctgcggatcgatctcttcgatcaggagatc
gagaccatccggaccttcgacccggagacccagcgttctcaggagaagctcgagcaggtt
cggatgctgccggcgcgcgagttcccgctgaccgaggaggcgatctcggggtttcgccag
cgctatcgggcaagcttcgagggcgacccgcaatccagcctggtctatcgcgaggtgtcg
gaggggcgcacgccggccgggcttgaatactatctgccgctttttttcgaggcgaccgcg
accctcttcgactatctgcccgcgggcgtcctggccttggagtccgacgcctgtcgcgag
accgcaacgaccttcattgccggcgtcgctcagcgctacgagcagcgtcgtcacgacatc
gaacgtccgctccttgcgccggccaagctctatctccaccccgacgagatggccggggcg
ctcaaccggctgtcgggcgttctctatcagtcgcacgaggtgacggatcgacgcaagggg
tatgcggcgttccacaacttcgcgacgagcaccctgcccccgctcgccatccaagcgcgc
gcggcgcatcccgcgcaagccttgcaggactttctgagcgcgcccgagcgtcgggtcctg
ttcgtcgccgagagtacggggcggcgcgagatgctcgccgagcacttggccgggttcaac
atccgcgcccgtcaggtcgatggctggcaagccttcatcgacggcgatctcgacctggcg
ttgaccgtcgccccgttggagcgcgggctcgtgctggaagaccgcggcatcgccctggtg
accgaaactcagctctatggcgagcgggtgcgccaggagcggcggcgccgagcgcgcgag
cgcgacagcgacgccatcgtgcgcaacctcaccgagctgaccgaaggtgcgccggtcgtc
cacgaagagcacggtgtcgggcgttatctggggctacagaccctgcaggtcggcggcatg
accaccgagttcctcgcgctcgaatatgccaacggcgacaaactctatgtcccggtcagc
tcgctgcatctgatctcacgctacacgggcgcctcgcccgagaacgcgcccctgcaccgt
ctcgggggcgagcagtgggaccggatcaaacgcaaggccgcgcagaaagcgcacgacgtg
gccgccgagctgctggatatctacgcacggcgcgccgcccgcgagggcgtagcctgccct
gccccgggggacgactatgccgccttcgccgccgccttccccttcgaggagacgcccgat
cagctgcgcgccatcgagggtgtgatcgcggacatggaagacgccaggccgatggatcgg
gtggtctgcggcgatgtcggcttcggcaagaccgaggtggccatgcgagcggccttcatg
gccgtgcagggcggacgtcaggtcgccgtactcgtcccgaccacattgctcgcccaacag
catttcgagaatttctcggaccgcttcgccgactggccgatcaagatcgagagcttgtcg
cggtttcgcaccgccaaggagcagaagaaggtgctggaaggtctggccgacggcacggtc
gacatcttggtcgggacccacaagctgctgcagcccactctgaaattcaagaatctggga
ctggcgatcatcgacgaagagcaccgtttcggggtgcgccataaggagcagctcaaaaac
ctgcgcagcgaggtcgatgtcctcacgctcacggcaacgccgattccgcgcacgctcaac
atggccatgtccggcctgcgggatctgtccatcatcgccacgccgccggtcgagcgtcat
ccgatcaagaccttcgtcagcccgtggagcgacagcctgattcaggaggcggtgctgcgc
gagctcaaacgcggtggtcaggtctatttcctgcacaacgaggtcgagacgatcgagaac
caggcacagaagctcgaggccctgatcccggaggcgcgcgtgcaggtcgcgcacggacag
atgcgcgagcgcgatctcgagcgggtaatgcgcgacttctatcaccagcgcttcaacctg
ctggtctgcaccaccatcgtcgagagcggtatcgacgttccgagcgccaacaccatcgtc
atcaatcgggcggacaagctcggtctagcacaactgcatcagctgcggggacgggtcggg
cgctcgcaccatcgcgcctatgcctatctcatcacgccaccgaccaaggcgatgacggcg
gacgccaagaagcgcctggaggcaatcgaatcgatggaggatctgggagccggcttcacg
ctcgcgacccatgatctcgagatccgcggcgcgggcgagctgctcggggacgagcaatcc
ggtcagatccacgaggtcggattctcgctctacatggacctgctcgaacgcgccgtccag
gcgctcaaggccggtcgcacgcccgagctcgatcgtccgctcagccacggcgccgagatc
gacctcggcctacccgccctcttgccgagcgactatctgcccgacgtgcacgcgcggctc
gtgatgtacaagcggattgcgagtgccgccacgacaggcgatcttcgggagctgcaggtg
gagatgatcgatcgcttcggtctgctgcccgaaccggccaagaacctgctcgagatcacc
gagctgaagctgaaggtccagccgtatgggatccgcaagatcgaagcgggcccggcgagc
gggcgaatcctcttcgacgagacgccgagcatcgaccccggcaatctgatccgcctgatt
cagcagaggccgaaggagttcaagctggacggcagcgacaagttgcggttttaccgggac
atggccgagccgcagcgccggctacaagaggtcaatgcggtgctccggcaattgatgggg
tga
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