KEGG   PATHWAY: tbr03008
Entry
tbr03008                    Pathway                                
Name
Ribosome biogenesis in eukaryotes - Trypanosoma brucei brucei
Description
Ribosomes are the cellular factories responsible for making proteins. In eukaryotes, ribosome biogenesis involves the production and correct assembly of four rRNAs and about 80 ribosomal proteins. It requires hundreds of factors not present in the mature particle. In the absence of these proteins, ribosome biogenesis is stalled and cell growth is terminated even under optimal growth conditions. The primary pre-rRNA transcript is assembled into the 90S pre-ribosome, which contains both 40S and 60S assembly factors. Within this complex, the pre-rRNA is cleaved. pre-60S ribosomes are subjected to several sequential processing steps in the nucleoplasm involving numerous assembly intermediates before it is exported to the cytoplasm and matured into the 60S ribosomal subunit. The pre-40S ribosome is matured to the small ribosomal subunit in the cytoplasm by cleavage.
Class
Genetic Information Processing; Translation
Pathway map
tbr03008  Ribosome biogenesis in eukaryotes
tbr03008

Organism
Trypanosoma brucei brucei [GN:tbr]
Gene
Tb11.01.2590  protein kinase ck2 regulatory subunit, putative [KO:K03115]
Tb09.211.4890  casein kinase II, putative [KO:K03097] [EC:2.7.11.1]
Tb927.2.2430  casein kinase II, alpha chain [KO:K03097] [EC:2.7.11.1]
Tb927.8.1980  hypothetical protein, conserved [KO:K14549]
Tb11.01.0280  hypothetical protein, conserved [KO:K14552]
Tb11.01.2250  hypothetical protein, conserved [KO:K14554]
Tb11.03.0680  hypothetical protein, conserved [KO:K14555]
Tb927.7.4220  hypothetical protein, conserved [KO:K14556]
Tb10.389.0160  periodic tryptophan protein 2, putative [KO:K14558]
Tb927.3.3590  U3 small nucleolar ribonucleoprotein protein MPP10, putative [KO:K14559]
Tb11.01.5500  U3 small nucleolar ribonucleoprotein IMP3 [KO:K14560]
Tb927.6.2780  U3 small nuclear ribonucleoprotein (snRNP), putative [KO:K14561]
Tb10.61.1920  fibrillarin, putative [KO:K14563] [EC:2.1.1.-]
Tb10.61.2040  fibrillarin, putative [KO:K14563] [EC:2.1.1.-]
Tb10.6k15.3160  fibrillarin [KO:K14563] [EC:2.1.1.-]
Tb927.8.3750  nucleolar protein, putative [KO:K14564]
Tb09.160.3820  uncharacterized protein [KO:K14565]
Tb09.160.3670  ribosomal protein S6, putative [KO:K12845]
Tb10.100.0060  centromere/microtubule binding protein [KO:K11131] [EC:5.4.99.-]
Tb927.4.750  50S ribosomal protein L7Ae, putative [KO:K11129]
Tb927.4.470  snoRNP protein gar1, putative [KO:K11128]
Tb10.70.2465  nucleolar RNA-binding protein, putative [KO:K11130]
Tb10.61.0490  hypothetical protein, conserved [KO:K14566]
Tb10.61.2440  hypothetical protein, conserved [KO:K14567]
Tb927.8.5040  hypothetical protein, conserved [KO:K14568] [EC:2.1.1.260]
Tb927.2.4980  hypothetical protein, conserved [KO:K14568] [EC:2.1.1.260]
Tb11.01.0820  hypothetical protein, conserved [KO:K14569]
Tb927.5.2530  hypothetical protein, conserved [KO:K14521] [EC:2.3.1.-]
Tb09.211.4870  RNA 3'-terminal phosphate cyclase-like protein [KO:K11108]
Tb927.7.4900  5'-3' exonuclease XRNA, putative [KO:K12618] [EC:3.1.13.-]
Tb10.70.0610  5'-3' exoribonuclease XRND, putative [KO:K12619] [EC:3.1.13.-]
Tb927.8.2810  5'-3' exonuclease XRNC, putative [KO:K12619] [EC:3.1.13.-]
Tb11.02.0620  nucleolar GTP-binding protein 1 [KO:K06943]
Tb927.7.7450  GTP-binding protein, putative [KO:K14537]
Tb11.55.0014  vesicular transport protein [KO:K14571]
TB927.1.880  hypothetical protein, conserved [KO:K14572]
Tb11.01.7680  uncharacterized protein [KO:K14573]
Tb11.01.2630  hypothetical protein, conserved [KO:K11883]
Tb927.3.1120  GTP-binding nuclear protein rtb2, putative [KO:K07936]
Tb11.01.5940  exportin 1 [KO:K14290]
Tb927.7.970  hypothetical protein, conserved [KO:K07562]
Tb11.22.0004  hypothetical protein, conserved [KO:K14284]
Tb927.7.5760  nuclear transport factor 2 protein, putative [KO:K14285]
Tb10.70.1770  eukaryotic translation initiation factor 6 [KO:K03264]
Tb927.4.3140  hypothetical protein, conserved [KO:K14574]
Tb927.5.4310  GTP-binding protein, putative [KO:K14539] [EC:3.6.1.-]
Tb927.6.3210  hypothetical protein, conserved [KO:K18532] [EC:2.7.4.3]
Tb927.3.5400  hypothetical protein, conserved [KO:K07178] [EC:2.7.11.1]
Tb927.6.2840  hypothetical protein, conserved [KO:K07179] [EC:2.7.11.1]
Reference
  Authors
Freed EF, Bleichert F, Dutca LM, Baserga SJ
  Title
When ribosomes go bad: diseases of ribosome biogenesis.
  Journal
Mol Biosyst 6:481-93 (2010)
DOI:10.1039/b919670f
Reference
  Authors
Perez-Fernandez J, Roman A, De Las Rivas J, Bustelo XR, Dosil M
  Title
The 90S preribosome is a multimodular structure that is assembled through a hierarchical mechanism.
  Journal
Mol Cell Biol 27:5414-29 (2007)
DOI:10.1128/MCB.00380-07
Reference
  Authors
Strunk BS, Karbstein K
  Title
Powering through ribosome assembly.
  Journal
RNA 15:2083-104 (2009)
DOI:10.1261/rna.1792109
Reference
  Authors
Granneman S, Baserga SJ
  Title
Ribosome biogenesis: of knobs and RNA processing.
  Journal
Exp Cell Res 296:43-50 (2004)
DOI:10.1016/j.yexcr.2004.03.016
Reference
  Authors
Kressler D, Hurt E, Bassler J
  Title
Driving ribosome assembly.
  Journal
Biochim Biophys Acta 1803:673-83 (2010)
DOI:10.1016/j.bbamcr.2009.10.009
Related
pathway
tbr03010  Ribosome
KO pathway
ko03008   
LinkDB

DBGET integrated database retrieval system