KEGG   Thermococcus barossii: A3L01_08440
Entry
A3L01_08440       CDS       T05081                                 
Name
(GenBank) DNA ligase
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
tbs  Thermococcus barossii
Pathway
tbs03030  DNA replication
tbs03410  Base excision repair
tbs03420  Nucleotide excision repair
tbs03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:tbs00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    A3L01_08440
   03410 Base excision repair
    A3L01_08440
   03420 Nucleotide excision repair
    A3L01_08440
   03430 Mismatch repair
    A3L01_08440
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:tbs03032]
    A3L01_08440
   03400 DNA repair and recombination proteins [BR:tbs03400]
    A3L01_08440
Enzymes [BR:tbs01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     A3L01_08440
    6.5.1.6  DNA ligase (ATP or NAD+)
     A3L01_08440
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     A3L01_08440
DNA replication proteins [BR:tbs03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    A3L01_08440
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     A3L01_08440
DNA repair and recombination proteins [BR:tbs03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     A3L01_08440
   NER (nucleotide excision repair)
    Other NER factors
     A3L01_08440
   MMR (mismatch excision repair)
    Other MMR factors
     A3L01_08440
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase DNA_ligase_OB_2 Tcp10_C DUF383
Other DBs
NCBI-ProteinID: ASJ05387
UniProt: A0A2Z2MG04
LinkDB
Position
complement(1550062..1551741)
AA seq 559 aa
MRYSELADLYKRLEKTTLKTLKTKFVADFLKKTPDELLEIIPYLILGKVFPDWDERELGV
GEKLLIKAVSMATGVPEREIENSIKDTGDLGESVALALKRKKQKSFFSQPLTIKRVYDTF
VKIAEASGQGSQDKKLKYLANIFMDAQPEEGKYLARTVLGTMRTGVAEGLLRDAIAEAFK
VKAELVERAYMLTSDFGYVAKVAKLEGNEGLSKVRIQVGKPIRPMLAQNAANVKEALVEM
GGKAAFEIKYDGARVQVHKDGERVIIYSRRLENVTKSIPEMVNAVLESLKPEKVIVEGEL
VAVGEGGKPRPFQYVLRRFRRKYNIEEMIEKIPLELNLFDVLYVDGDGLIDTPFSERRKR
LEEIVKGSEKIRLAEQLVTGSADEAETFYKKALELGHEGLMAKRLDSVYEPGNRGKKWLK
IKPTMEDLDLVIIGAEWGEGRRAHLLGSFLVAAFDPHSGEFVPVGKVGSGFTDEDLAEFT
RMLRPLIVREEGKFVEIEPKIVIEVTYQEIQKSPKYRSGFALRFPRYVALREDKSPEEAD
TIERIAQLYEFQERFKAKR
NT seq 1680 nt   +upstreamnt  +downstreamnt
atgaggtactccgaactggccgacctttacaaacgcctggaaaaaactaccctcaagacg
ctaaagacaaaatttgtcgccgacttcctcaagaagacacccgatgagctccttgagata
attccctacctcatcctcggcaaggtcttcccggactgggacgagagggagcttggtgtg
ggcgagaagctcctcataaaggccgtctccatggccaccggcgttccggagagggagata
gagaactccatcaaggacaccggcgaccttggagagagcgttgccctggcgctcaagagg
aagaagcagaagagcttcttcagccagccgctgacgataaagcgcgtctacgacaccttc
gtgaagatagccgaggccagcgggcaggggagccaggataaaaagctgaagtacctcgcc
aacatcttcatggacgcccagccggaggagggcaagtatttggccagaactgtcctcggg
acgatgaggacgggcgttgccgagggtctcctgagggacgccatagccgaggcctttaag
gtaaaggcggagctggttgagagggcctacatgctcacgagcgacttcggatacgtggca
aaggttgcgaagcttgagggtaacgaggggctctcgaaggttcgcatacaggttggaaag
ccgataaggccgatgctcgctcaaaacgcggcgaacgtgaaggaagcgcttgttgagatg
ggagggaaggcggcgtttgaaatcaaatacgacggcgctcgcgttcaggttcacaaggac
ggcgagagggtgatcatctattcccgcaggctggagaacgttacgaagtccattccggag
atggtcaatgcagtgcttgaaagcctgaagcccgagaaagtcatcgtcgagggtgagctc
gttgccgtcggggagggcggaaagccgaggccattccagtacgttctcaggcgcttcagg
aggaagtacaacatcgaggagatgatagagaagattcccttggagctgaaccttttcgac
gttctctacgttgacggggacgggctgattgataccccattctccgagcgcagaaagcgg
cttgaagaaattgtgaaggggagcgagaagataaggctggcggagcagcttgtgacggga
agtgcagacgaggcggagacgttctacaagaaagcccttgagctcggccacgaggggctg
atggccaagagactcgattccgtctacgagcccgggaacaggggcaagaagtggctcaag
ataaagcccaccatggaggacctggacctcgtcatcatcggcgcggaatggggcgaggga
aggcgcgcacatctgctcggctccttcctggtggccgctttcgacccgcacagcggcgag
ttcgtccctgttggaaaggtgggaagcggattcacggacgaggacttagcggagttcacg
agaatgctcaggccactcatagtccgcgaggagggcaagttcgtggagatagagcctaag
atagtcatcgaggttacctaccaggagattcagaagagccccaagtacaggagcggtttt
gccctgaggttcccgcgctacgtcgctttgagggaggacaagagcccggaggaggcggac
acaattgagcgcatagcccagctctacgagttccaggagaggttcaaggcgaagaggtga

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